Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACJROX_RS12245 Genome accession   NZ_CP174509
Coordinates   2356850..2357281 (+) Length   143 a.a.
NCBI ID   WP_408011038.1    Uniprot ID   -
Organism   Pseudalkalibacillus sp. A8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2351850..2362281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJROX_RS12220 (ACJROX_12220) - 2352014..2352793 (+) 780 WP_408011034.1 DUF3388 domain-containing protein -
  ACJROX_RS12225 (ACJROX_12225) - 2352812..2353732 (+) 921 WP_408011035.1 helix-turn-helix domain-containing protein -
  ACJROX_RS12230 (ACJROX_12230) pgsA 2353925..2354503 (+) 579 WP_408011036.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACJROX_RS12235 (ACJROX_12235) cinA 2354577..2355815 (+) 1239 WP_408011037.1 competence/damage-inducible protein A Machinery gene
  ACJROX_RS12240 (ACJROX_12240) recA 2355914..2356522 (+) 609 Protein_2362 recombinase RecA -
  ACJROX_RS12245 (ACJROX_12245) recA 2356850..2357281 (+) 432 WP_408011038.1 hypothetical protein Machinery gene
  ACJROX_RS12250 (ACJROX_12250) rny 2357555..2359123 (+) 1569 WP_408011039.1 ribonuclease Y -
  ACJROX_RS12255 (ACJROX_12255) - 2359531..2360325 (+) 795 WP_408011040.1 TIGR00282 family metallophosphoesterase -
  ACJROX_RS12260 (ACJROX_12260) spoVS 2360414..2360674 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -
  ACJROX_RS12265 (ACJROX_12265) - 2360999..2361922 (+) 924 WP_408011041.1 dipeptidase -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16069.00 Da        Isoelectric Point: 5.0516

>NTDB_id=1077539 ACJROX_RS12245 WP_408011038.1 2356850..2357281(+) (recA) [Pseudalkalibacillus sp. A8]
MPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKTRIKVVKNKVAPPFKTAEVDIMYGEGISRQGEILDIGSGIDVV
QKSGAWYSFNGDRLGQGRENAKQFLKENEAIENEIYQQIRSYYQMNTETAAAKEDTEEQDSLV

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1077539 ACJROX_RS12245 WP_408011038.1 2356850..2357281(+) (recA) [Pseudalkalibacillus sp. A8]
ATGCCAGAAACAACTCCTGGGGGACGCGCCCTCAAATTCTATTCTTCCGTACGTCTGGAAGTACGAAGAGCAGAAACCTT
AAAGCAAGGTAACGACATGGTTGGAAACAAGACGCGTATCAAGGTCGTCAAGAACAAGGTTGCACCTCCGTTCAAAACAG
CAGAAGTAGATATCATGTATGGAGAAGGGATTTCAAGACAGGGTGAAATCCTCGATATCGGGTCTGGAATCGATGTCGTA
CAGAAGAGTGGTGCTTGGTATTCCTTCAATGGCGACAGGCTCGGTCAAGGACGCGAAAACGCGAAGCAATTCTTGAAGGA
AAACGAAGCGATCGAAAATGAAATCTATCAACAGATCCGCTCTTATTATCAAATGAACACTGAAACGGCGGCAGCCAAAG
AAGACACAGAAGAACAAGATTCGTTAGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(2-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76

87.413

0.664
  recA Latilactobacillus sakei subsp. sakei 23K

64

87.413

0.559
  recA Streptococcus mutans UA159

54.861

100

0.552
  recA Streptococcus mitis NCTC 12261

54.167

100

0.545
  recA Streptococcus pneumoniae R6

55

97.902

0.538
  recA Streptococcus pneumoniae Rx1

55

97.902

0.538
  recA Streptococcus pneumoniae D39

55

97.902

0.538
  recA Streptococcus pneumoniae TIGR4

55

97.902

0.538
  recA Streptococcus mitis SK321

54.286

97.902

0.531
  recA Pseudomonas stutzeri DSM 10701

52.817

99.301

0.524
  recA Vibrio cholerae O1 biovar El Tor strain E7946

52.113

99.301

0.517
  recA Vibrio cholerae strain A1552

52.113

99.301

0.517
  recA Helicobacter pylori 26695

53.623

96.503

0.517
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.623

96.503

0.517
  recA Helicobacter pylori strain NCTC11637

53.623

96.503

0.517
  recA Ralstonia pseudosolanacearum GMI1000

53.237

97.203

0.517
  recA Neisseria gonorrhoeae MS11

54.478

93.706

0.51
  recA Neisseria gonorrhoeae MS11

54.478

93.706

0.51
  recA Neisseria gonorrhoeae strain FA1090

54.478

93.706

0.51
  recA Streptococcus pyogenes NZ131

57.143

88.112

0.503
  recA Acinetobacter baumannii D1279779

48.951

100

0.49
  recA Glaesserella parasuis strain SC1401

48.592

99.301

0.483
  recA Lactococcus lactis subsp. cremoris KW2

50.37

94.406

0.476
  recA Acinetobacter baylyi ADP1

47.552

100

0.476
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

52.344

89.51

0.469
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.802

84.615

0.371

Multiple sequence alignment