Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACJROX_RS12235 Genome accession   NZ_CP174509
Coordinates   2354577..2355815 (+) Length   412 a.a.
NCBI ID   WP_408011037.1    Uniprot ID   -
Organism   Pseudalkalibacillus sp. A8     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2349577..2360815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJROX_RS12210 (ACJROX_12210) ymfI 2350732..2351454 (+) 723 WP_408011032.1 elongation factor P 5-aminopentanone reductase -
  ACJROX_RS12215 (ACJROX_12215) - 2351530..2351781 (+) 252 WP_408011033.1 DUF3243 domain-containing protein -
  ACJROX_RS12220 (ACJROX_12220) - 2352014..2352793 (+) 780 WP_408011034.1 DUF3388 domain-containing protein -
  ACJROX_RS12225 (ACJROX_12225) - 2352812..2353732 (+) 921 WP_408011035.1 helix-turn-helix domain-containing protein -
  ACJROX_RS12230 (ACJROX_12230) pgsA 2353925..2354503 (+) 579 WP_408011036.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACJROX_RS12235 (ACJROX_12235) cinA 2354577..2355815 (+) 1239 WP_408011037.1 competence/damage-inducible protein A Machinery gene
  ACJROX_RS12240 (ACJROX_12240) recA 2355914..2356522 (+) 609 Protein_2362 recombinase RecA -
  ACJROX_RS12245 (ACJROX_12245) recA 2356850..2357281 (+) 432 WP_408011038.1 hypothetical protein Machinery gene
  ACJROX_RS12250 (ACJROX_12250) rny 2357555..2359123 (+) 1569 WP_408011039.1 ribonuclease Y -
  ACJROX_RS12255 (ACJROX_12255) - 2359531..2360325 (+) 795 WP_408011040.1 TIGR00282 family metallophosphoesterase -
  ACJROX_RS12260 (ACJROX_12260) spoVS 2360414..2360674 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45750.28 Da        Isoelectric Point: 4.3569

>NTDB_id=1077538 ACJROX_RS12235 WP_408011037.1 2354577..2355815(+) (cinA) [Pseudalkalibacillus sp. A8]
MNAEIIAIGSELLLGQIANTNGQFISKQLADQGINVYHHSVVGDNKQRLISTIQIAEERSDLLIFTGGLGPTKDDLTKET
IAEHLGLPLIENKEAMDFIEGYYEKIQQPMSENNRRQALVFEGAAVLPNNNGMAPGIALQKENKIYILLPGPPKEMKPMF
TDFAIPYIQQLRGEEVELILSRVLRFYGIGESTLETKLMDLIEGQTNPTIAPLAGIFEVTLRLTAKCDIEEQGERMIDEL
EKEIFDRVGQFFYGYDDTTLSYETFDMLQEKELTVSCAESLTGGFFGHELTKQPGAGQVLQGGIICYQNEIKMNQLKIPE
KVLDEDGAVSELCAELMAENVRELFKSDYGISFTGVAGPDEMEGKPPGTVYIGIASPQETKVYPLKLAGDRNAVRTRTVN
YGLFYLLKQLVG

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=1077538 ACJROX_RS12235 WP_408011037.1 2354577..2355815(+) (cinA) [Pseudalkalibacillus sp. A8]
ATGAACGCAGAAATCATAGCAATAGGCTCAGAGTTACTTTTAGGCCAAATCGCCAATACGAATGGCCAATTCATTTCTAA
ACAGCTGGCAGATCAAGGCATCAATGTTTACCACCATTCGGTCGTCGGAGATAACAAACAACGGCTGATTTCAACGATCC
AGATCGCTGAAGAACGCTCTGATCTATTGATTTTCACCGGTGGACTGGGACCTACAAAGGATGATCTCACGAAAGAAACG
ATTGCAGAGCACCTCGGTCTTCCTTTGATCGAAAATAAAGAAGCGATGGATTTCATTGAAGGATATTACGAGAAAATCCA
GCAACCAATGTCTGAGAATAACCGCAGACAAGCCCTTGTGTTTGAAGGAGCTGCTGTACTGCCGAACAACAATGGGATGG
CTCCGGGGATCGCTTTGCAAAAAGAAAACAAGATTTATATTCTTCTCCCTGGACCACCGAAGGAAATGAAACCGATGTTC
ACCGACTTTGCCATTCCATACATACAGCAATTGAGAGGGGAAGAAGTAGAGCTTATTCTTTCACGTGTACTCCGTTTCTA
CGGTATCGGTGAATCGACGCTTGAAACGAAATTGATGGATCTCATCGAGGGACAGACGAATCCGACGATTGCACCTCTAG
CGGGTATTTTCGAGGTGACCTTGAGACTGACTGCCAAGTGTGATATTGAGGAACAAGGTGAAAGAATGATCGATGAACTT
GAAAAGGAAATTTTTGATCGAGTCGGGCAATTTTTTTATGGCTATGATGACACCACACTTTCCTACGAAACCTTCGATAT
GTTGCAAGAAAAAGAACTTACAGTTTCTTGCGCTGAAAGTTTGACGGGTGGATTTTTCGGACATGAGCTGACGAAGCAGC
CTGGAGCAGGGCAAGTCTTACAGGGCGGCATCATATGCTATCAGAATGAAATCAAGATGAATCAATTGAAAATCCCGGAA
AAAGTGTTGGATGAAGATGGAGCGGTAAGTGAATTGTGTGCCGAACTGATGGCAGAAAATGTACGGGAGTTATTCAAAAG
TGATTATGGGATCAGCTTCACTGGTGTAGCAGGACCGGATGAAATGGAAGGTAAGCCGCCCGGAACAGTATATATCGGAA
TCGCCTCTCCACAAGAGACGAAGGTATATCCGTTAAAACTTGCTGGTGACCGAAATGCTGTAAGAACACGTACAGTCAAC
TACGGATTGTTTTATTTACTGAAACAACTTGTGGGGTAG

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

55.637

99.029

0.551
  cinA Streptococcus mitis SK321

43.972

100

0.451
  cinA Streptococcus mitis NCTC 12261

43.972

100

0.451
  cinA Streptococcus mutans UA159

44.444

100

0.447
  cinA Streptococcus pneumoniae TIGR4

43.705

100

0.447
  cinA Streptococcus pneumoniae Rx1

43.468

100

0.444
  cinA Streptococcus pneumoniae R6

43.468

100

0.444
  cinA Streptococcus pneumoniae D39

43.23

100

0.442
  cinA Streptococcus suis isolate S10

37.626

96.117

0.362

Multiple sequence alignment