Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACH36K_RS08800 Genome accession   NZ_CP174370
Coordinates   1886386..1887426 (+) Length   346 a.a.
NCBI ID   WP_411170555.1    Uniprot ID   -
Organism   Clostridium sp. MB05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1881386..1892426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH36K_RS08785 (ACH36K_08780) - 1881807..1884212 (+) 2406 WP_411170675.1 DNA translocase FtsK 4TM domain-containing protein -
  ACH36K_RS08790 (ACH36K_08785) rimO 1884298..1885635 (+) 1338 WP_411170553.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ACH36K_RS08795 (ACH36K_08790) pgsA 1885619..1886209 (+) 591 WP_411170554.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACH36K_RS08800 (ACH36K_08795) recA 1886386..1887426 (+) 1041 WP_411170555.1 recombinase RecA Machinery gene
  ACH36K_RS08805 (ACH36K_08800) rny 1887743..1889287 (+) 1545 WP_411170556.1 ribonuclease Y -
  ACH36K_RS08810 (ACH36K_08805) - 1889471..1889731 (+) 261 WP_016206312.1 stage V sporulation protein S -
  ACH36K_RS08815 (ACH36K_08810) - 1889944..1890204 (+) 261 WP_411170557.1 HPr family phosphocarrier protein -
  ACH36K_RS08820 (ACH36K_08815) - 1890263..1890481 (-) 219 WP_411170558.1 DUF378 domain-containing protein -
  ACH36K_RS08825 (ACH36K_08820) purB 1890640..1892070 (+) 1431 WP_411170559.1 adenylosuccinate lyase -
  ACH36K_RS08830 (ACH36K_08825) - 1892222..1892389 (+) 168 WP_411170560.1 hypothetical protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37334.59 Da        Isoelectric Point: 5.5722

>NTDB_id=1076914 ACH36K_RS08800 WP_411170555.1 1886386..1887426(+) (recA) [Clostridium sp. MB05]
MGNIDIDKLKAIENAMGQIEKQFGKGSIMKLGENSSLNIESISTGCLDLDIALGIGGVPKGRIIEIYGPESSGKTTVALH
IAAEAQKNGGAVAFIDAEHALDPSYARNLGVDTENLIVSQPDTGEQGLEIAEALVRSGAIDVIVVDSVAALVPRAEIEGE
MGDSHVGLQARLMSQALRKLTGTIQKTGCVAIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRIDSIKQGEGIV
GNRTRVKVMKNKVAPPFKQAEFDIMYNEGISRTGNIVDVGVKEGIVQKSGAWFSYGDIRLGQGRENAKQYLKDNAETALE
IENKIREKYDLPVMKEVSTNKNGKEE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1076914 ACH36K_RS08800 WP_411170555.1 1886386..1887426(+) (recA) [Clostridium sp. MB05]
ATGGGAAATATAGATATTGATAAGTTAAAAGCTATAGAAAATGCAATGGGTCAAATTGAAAAGCAGTTTGGTAAAGGATC
TATAATGAAACTAGGTGAGAATAGTTCATTAAATATAGAATCTATTTCAACAGGTTGTCTTGACTTGGATATAGCTTTAG
GAATAGGGGGAGTTCCTAAGGGAAGAATAATAGAAATATATGGACCAGAAAGTTCAGGTAAAACAACAGTAGCTTTACAT
ATTGCTGCTGAAGCTCAAAAAAATGGTGGAGCTGTTGCGTTTATAGATGCAGAACATGCTTTAGATCCAAGTTATGCGAG
AAATTTAGGGGTTGATACTGAAAATCTTATAGTTTCACAACCAGATACAGGTGAACAAGGGCTTGAAATTGCTGAAGCTT
TAGTTCGTTCAGGAGCAATTGATGTTATAGTAGTTGACTCAGTTGCAGCATTAGTTCCAAGAGCAGAAATTGAAGGTGAA
ATGGGTGATTCTCACGTTGGTCTTCAAGCGAGACTTATGTCCCAAGCTTTAAGAAAATTAACAGGAACTATCCAAAAAAC
AGGCTGTGTGGCTATATTTATAAACCAATTAAGAGAAAAGGTTGGAGTTATGTTTGGAAATCCTGAAACTACAACAGGTG
GAAGAGCTTTAAAGTTCTATTCTTCAGTTAGACTTGATGTTAGAAGAATTGATTCAATAAAGCAAGGTGAAGGCATTGTA
GGAAACAGAACAAGAGTTAAGGTAATGAAAAATAAAGTAGCTCCTCCATTTAAGCAAGCTGAATTTGATATAATGTATAA
TGAAGGTATATCAAGGACTGGTAATATTGTAGATGTAGGTGTTAAAGAAGGAATAGTTCAAAAAAGTGGAGCATGGTTTT
CTTATGGCGATATAAGACTTGGCCAAGGTAGAGAAAATGCAAAACAATACTTAAAAGATAATGCTGAAACAGCATTAGAA
ATAGAAAATAAGATAAGAGAAAAATATGATTTACCAGTTATGAAAGAGGTTTCTACAAATAAAAATGGCAAAGAAGAATA
A

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

70.154

93.931

0.659
  recA Helicobacter pylori 26695

68

93.931

0.639
  recA Helicobacter pylori strain NCTC11637

67.385

93.931

0.633
  recA Latilactobacillus sakei subsp. sakei 23K

64.793

97.688

0.633
  recA Streptococcus pneumoniae D39

63.265

99.133

0.627
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.265

99.133

0.627
  recA Streptococcus pneumoniae TIGR4

63.265

99.133

0.627
  recA Streptococcus pneumoniae R6

63.265

99.133

0.627
  recA Streptococcus pneumoniae Rx1

63.265

99.133

0.627
  recA Neisseria gonorrhoeae MS11

67.29

92.775

0.624
  recA Neisseria gonorrhoeae strain FA1090

67.29

92.775

0.624
  recA Neisseria gonorrhoeae MS11

67.29

92.775

0.624
  recA Streptococcus mitis NCTC 12261

63.393

97.11

0.616
  recA Streptococcus mitis SK321

63.393

97.11

0.616
  recA Ralstonia pseudosolanacearum GMI1000

64.939

94.798

0.616
  recA Acinetobacter baumannii D1279779

65.231

93.931

0.613
  recA Pseudomonas stutzeri DSM 10701

65.231

93.931

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.634

94.798

0.613
  recA Acinetobacter baylyi ADP1

61.516

99.133

0.61
  recA Glaesserella parasuis strain SC1401

66.144

92.197

0.61
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.815

93.642

0.607
  recA Vibrio cholerae strain A1552

64.815

93.642

0.607
  recA Streptococcus pyogenes NZ131

64.22

94.509

0.607
  recA Streptococcus mutans UA159

63.526

95.087

0.604
  recA Lactococcus lactis subsp. cremoris KW2

62.462

96.243

0.601
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.125

92.486

0.584

Multiple sequence alignment