Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACGLYD_RS12130 Genome accession   NZ_CP172607
Coordinates   2516532..2517590 (-) Length   352 a.a.
NCBI ID   WP_067211085.1    Uniprot ID   A0A7G8X2P0
Organism   Sporosarcina sp. SG10008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2511532..2522590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGLYD_RS12110 (ACGLYD_12110) miaB 2511546..2513087 (-) 1542 WP_399628125.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACGLYD_RS12115 (ACGLYD_12115) - 2513505..2513777 (-) 273 WP_067211081.1 stage V sporulation protein S -
  ACGLYD_RS12120 (ACGLYD_12120) - 2513864..2514661 (-) 798 WP_067214009.1 TIGR00282 family metallophosphoesterase -
  ACGLYD_RS12125 (ACGLYD_12125) rny 2514726..2516285 (-) 1560 WP_067211083.1 ribonuclease Y -
  ACGLYD_RS12130 (ACGLYD_12130) recA 2516532..2517590 (-) 1059 WP_067211085.1 recombinase RecA Machinery gene
  ACGLYD_RS12135 (ACGLYD_12135) cinA 2517767..2519020 (-) 1254 WP_399628130.1 competence/damage-inducible protein A Machinery gene
  ACGLYD_RS12140 (ACGLYD_12140) pgsA 2519035..2519613 (-) 579 WP_067211090.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACGLYD_RS12145 (ACGLYD_12145) - 2519664..2520494 (-) 831 WP_067211093.1 helix-turn-helix domain-containing protein -
  ACGLYD_RS12150 (ACGLYD_12150) - 2520547..2521344 (-) 798 WP_067211096.1 DUF3388 domain-containing protein -
  ACGLYD_RS12155 (ACGLYD_12155) ymfI 2521630..2522364 (-) 735 WP_399628133.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37930.98 Da        Isoelectric Point: 4.7457

>NTDB_id=1068358 ACGLYD_RS12130 WP_067211085.1 2516532..2517590(-) (recA) [Sporosarcina sp. SG10008]
MSDRKAALEMALKQIEKQFGKGSIMKLGEKTNLEVETSSTGSLALDAALGIGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQAAGGTAAFIDAEHALDPIYARKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIFVVDSVAALVPKAEIEGEMGDS
HIGLQARLMSQALRKLSGAINKSNTIAIFINQIREKVGVMFGSPEVTPGGRALKFYSSVRLDVRRGEAIKQGNDIVGNKT
RIRVVKNKVAPPFKTAEVDIMYGEGISREGEIIDLGAEAEVVQKSGSWYSYEGERLGQGRENSKQFLKENPDIRSEIANK
IRESYGLASSNYVIGAHEVDEDEELELLLGEE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1068358 ACGLYD_RS12130 WP_067211085.1 2516532..2517590(-) (recA) [Sporosarcina sp. SG10008]
TTGAGCGATCGTAAAGCCGCCTTAGAAATGGCGTTAAAACAAATAGAAAAGCAGTTTGGTAAAGGATCTATTATGAAACT
GGGTGAAAAAACAAACCTGGAAGTTGAAACTTCTTCTACGGGCTCCCTTGCTCTTGATGCTGCACTCGGCATAGGCGGAT
ATCCACGCGGCCGTGTCATTGAAATATACGGACCTGAAAGTTCTGGTAAAACGACTGTTGCCCTTCATGCCATTGCAGAA
GTACAAGCAGCTGGAGGAACTGCTGCATTCATCGATGCTGAACATGCGCTCGATCCGATTTATGCGCGTAAGTTAGGCGT
TAACATCGATGAATTATTACTTTCTCAGCCTGACACGGGAGAGCAAGCGCTTGAAATCGCTGAAGCGCTTGTACGAAGCG
GTGCAGTTGATATTTTTGTCGTGGACTCCGTTGCTGCGCTTGTACCTAAAGCAGAGATTGAAGGCGAGATGGGAGATTCG
CATATCGGGTTACAAGCCCGTCTTATGTCACAAGCATTGCGTAAACTTTCCGGTGCCATTAATAAGTCAAACACAATCGC
GATATTTATTAACCAAATCCGTGAAAAAGTCGGCGTTATGTTCGGAAGCCCTGAAGTAACTCCAGGCGGGCGCGCATTGA
AGTTCTACTCTTCAGTACGCCTAGATGTAAGACGTGGAGAAGCGATTAAACAAGGCAATGACATAGTGGGAAATAAAACA
CGAATCCGCGTTGTGAAAAATAAAGTTGCACCTCCGTTTAAAACAGCGGAAGTTGATATTATGTACGGAGAAGGAATTTC
TCGAGAAGGAGAAATTATCGACCTTGGTGCCGAAGCCGAAGTTGTCCAGAAGAGTGGATCTTGGTATTCCTATGAAGGAG
AACGACTCGGACAGGGACGAGAGAATTCGAAACAATTCTTGAAAGAAAACCCGGATATCCGTTCGGAAATCGCCAACAAA
ATTCGTGAATCATATGGACTTGCAAGCTCAAACTATGTGATTGGTGCTCATGAAGTAGACGAAGATGAAGAGTTGGAACT
ACTACTTGGTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8X2P0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.784

94.602

0.793
  recA Latilactobacillus sakei subsp. sakei 23K

73.62

92.614

0.682
  recA Streptococcus mitis NCTC 12261

63.435

100

0.651
  recA Streptococcus mitis SK321

63.158

100

0.648
  recA Ralstonia pseudosolanacearum GMI1000

68.598

93.182

0.639
  recA Streptococcus pyogenes NZ131

63.818

99.716

0.636
  recA Streptococcus mutans UA159

67.477

93.466

0.631
  recA Streptococcus pneumoniae TIGR4

66.667

93.75

0.625
  recA Streptococcus pneumoniae Rx1

66.667

93.75

0.625
  recA Streptococcus pneumoniae D39

66.667

93.75

0.625
  recA Streptococcus pneumoniae R6

66.667

93.75

0.625
  recA Acinetobacter baumannii D1279779

62.824

98.58

0.619
  recA Neisseria gonorrhoeae strain FA1090

66.261

93.466

0.619
  recA Neisseria gonorrhoeae MS11

66.261

93.466

0.619
  recA Neisseria gonorrhoeae MS11

66.261

93.466

0.619
  recA Lactococcus lactis subsp. cremoris KW2

65.758

93.75

0.616
  recA Acinetobacter baylyi ADP1

62.717

98.295

0.616
  recA Vibrio cholerae strain A1552

67.29

91.193

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.29

91.193

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

97.443

0.605
  recA Glaesserella parasuis strain SC1401

62.463

96.875

0.605
  recA Pseudomonas stutzeri DSM 10701

64.134

93.466

0.599
  recA Helicobacter pylori strain NCTC11637

62.769

92.33

0.58
  recA Helicobacter pylori 26695

62.462

92.33

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.468

92.898

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

90.909

0.568

Multiple sequence alignment