Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACGLYD_RS12135 Genome accession   NZ_CP172607
Coordinates   2517767..2519020 (-) Length   417 a.a.
NCBI ID   WP_399628130.1    Uniprot ID   -
Organism   Sporosarcina sp. SG10008     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2512767..2524020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGLYD_RS12115 (ACGLYD_12115) - 2513505..2513777 (-) 273 WP_067211081.1 stage V sporulation protein S -
  ACGLYD_RS12120 (ACGLYD_12120) - 2513864..2514661 (-) 798 WP_067214009.1 TIGR00282 family metallophosphoesterase -
  ACGLYD_RS12125 (ACGLYD_12125) rny 2514726..2516285 (-) 1560 WP_067211083.1 ribonuclease Y -
  ACGLYD_RS12130 (ACGLYD_12130) recA 2516532..2517590 (-) 1059 WP_067211085.1 recombinase RecA Machinery gene
  ACGLYD_RS12135 (ACGLYD_12135) cinA 2517767..2519020 (-) 1254 WP_399628130.1 competence/damage-inducible protein A Machinery gene
  ACGLYD_RS12140 (ACGLYD_12140) pgsA 2519035..2519613 (-) 579 WP_067211090.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACGLYD_RS12145 (ACGLYD_12145) - 2519664..2520494 (-) 831 WP_067211093.1 helix-turn-helix domain-containing protein -
  ACGLYD_RS12150 (ACGLYD_12150) - 2520547..2521344 (-) 798 WP_067211096.1 DUF3388 domain-containing protein -
  ACGLYD_RS12155 (ACGLYD_12155) ymfI 2521630..2522364 (-) 735 WP_399628133.1 elongation factor P 5-aminopentanone reductase -
  ACGLYD_RS12160 (ACGLYD_12160) yfmH 2522361..2523659 (-) 1299 WP_067214010.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45054.80 Da        Isoelectric Point: 4.9377

>NTDB_id=1068359 ACGLYD_RS12135 WP_399628130.1 2517767..2519020(-) (cinA) [Sporosarcina sp. SG10008]
MKAEIIAIGSELLLGQITNTNAKFISLKLAEIGIDVHYQTVVGDNPDRLDEVIEIAMKRADILIFTGGLGPTKDDMTKET
IVKHIGTTLVSDDEALLYIQQYFERSGRVMTENNKKQALVFKGAKVLANRKGMAPGMAVEKDEVRYILLPGPPHEMEPMF
TDEAIPYLLGVTGKQEVITSRVLKFYGIGEAELEHRIQPILEKQTNPTVAPLATADAVTLRLTAKAQTTDAALKLIAPIE
EEIRLLVGDYIYGTDDDTLASKAAELLIRNGWTIAAAESLTSGLFMAELAGEPGISSSLEGGIVVYNEKSKVEQLGIEQS
LLAEYGVVSAECAAALAVNVKRTFKSDIGIGLTGAAGPDPHDGKPVGTVWIGIASTNAETETFKLLLSGSRNANRLRAAR
FALYYLIKHLTTKEGQS

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=1068359 ACGLYD_RS12135 WP_399628130.1 2517767..2519020(-) (cinA) [Sporosarcina sp. SG10008]
ATGAAGGCAGAAATTATTGCAATTGGCTCAGAGTTATTACTTGGACAAATTACGAATACGAATGCTAAATTCATTTCGTT
AAAACTCGCAGAAATTGGTATCGATGTTCATTATCAGACGGTCGTGGGCGACAACCCGGATCGTTTGGATGAAGTGATTG
AAATTGCAATGAAACGTGCAGATATTCTAATCTTTACAGGCGGACTTGGACCGACGAAAGATGACATGACAAAAGAAACC
ATCGTGAAACATATCGGTACAACATTAGTCAGCGATGACGAGGCACTTCTTTATATTCAGCAATATTTCGAACGTAGCGG
TAGGGTTATGACGGAGAATAATAAGAAACAGGCACTAGTGTTTAAAGGCGCGAAAGTCTTAGCAAACCGAAAAGGAATGG
CACCCGGAATGGCTGTTGAAAAGGATGAAGTACGCTATATCCTTCTACCAGGTCCACCGCATGAAATGGAGCCAATGTTT
ACGGATGAGGCGATTCCTTATTTGTTAGGTGTTACTGGCAAACAGGAAGTAATAACTTCGCGAGTTCTGAAGTTTTACGG
TATTGGGGAGGCGGAGCTTGAACACCGGATTCAACCCATTTTGGAAAAACAAACGAATCCGACAGTTGCGCCGCTGGCAA
CAGCTGACGCGGTCACATTGCGCCTCACTGCAAAAGCACAAACGACCGATGCAGCGTTGAAGCTGATTGCACCTATAGAA
GAGGAAATACGTCTACTAGTAGGAGACTACATCTACGGAACTGATGATGATACATTGGCATCCAAAGCTGCAGAACTTCT
CATTCGAAACGGTTGGACAATAGCTGCTGCGGAAAGTCTGACGTCAGGTCTATTTATGGCAGAACTGGCCGGTGAACCAG
GGATTAGTTCGTCACTAGAAGGTGGCATTGTCGTCTACAATGAGAAATCGAAAGTAGAACAACTTGGTATTGAGCAGTCC
CTACTTGCGGAGTATGGTGTCGTCAGTGCAGAATGCGCGGCTGCCCTTGCGGTAAACGTGAAACGAACGTTCAAATCGGA
TATTGGAATTGGTTTAACAGGTGCGGCAGGCCCAGATCCACATGATGGGAAGCCAGTCGGCACTGTGTGGATTGGTATCG
CTTCTACGAATGCAGAGACAGAGACATTTAAGTTGTTACTATCGGGTTCAAGAAACGCAAACCGTCTCAGAGCAGCAAGA
TTTGCGCTCTATTATCTGATTAAACACCTAACTACAAAAGAAGGCCAAAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.243

98.801

0.496
  cinA Streptococcus pneumoniae TIGR4

44.125

100

0.441
  cinA Streptococcus pneumoniae Rx1

44.125

100

0.441
  cinA Streptococcus pneumoniae R6

44.125

100

0.441
  cinA Streptococcus pneumoniae D39

43.885

100

0.439
  cinA Streptococcus mitis NCTC 12261

43.645

100

0.436
  cinA Streptococcus mitis SK321

43.405

100

0.434
  cinA Streptococcus mutans UA159

41.404

99.041

0.41

Multiple sequence alignment