Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFSN5_RS10025 Genome accession   NZ_CP172427
Coordinates   2171599..2172741 (-) Length   380 a.a.
NCBI ID   WP_165212933.1    Uniprot ID   -
Organism   Streptococcus sp. ZJ 1593     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2166599..2177741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFSN5_RS09990 (ACFSN5_09990) - 2166854..2168491 (-) 1638 WP_165212925.1 DUF2079 domain-containing protein -
  ACFSN5_RS09995 (ACFSN5_09995) - 2168637..2168762 (-) 126 WP_277423774.1 hypothetical protein -
  ACFSN5_RS10000 (ACFSN5_10000) - 2168872..2169171 (-) 300 WP_165212927.1 DUF1292 domain-containing protein -
  ACFSN5_RS10005 (ACFSN5_10005) ruvX 2169186..2169605 (-) 420 WP_004226676.1 Holliday junction resolvase RuvX -
  ACFSN5_RS10010 (ACFSN5_10010) - 2169605..2169871 (-) 267 WP_002960554.1 IreB family regulatory phosphoprotein -
  ACFSN5_RS10015 (ACFSN5_10015) - 2170057..2170647 (-) 591 WP_165212929.1 SP0191 family lipoprotein -
  ACFSN5_RS10020 (ACFSN5_10020) spx 2170851..2171249 (-) 399 WP_165212931.1 transcriptional regulator Spx -
  ACFSN5_RS10025 (ACFSN5_10025) recA 2171599..2172741 (-) 1143 WP_165212933.1 recombinase RecA Machinery gene
  ACFSN5_RS10030 (ACFSN5_10030) cinA 2172775..2174046 (-) 1272 WP_165212935.1 competence/damage-inducible protein A Machinery gene
  ACFSN5_RS10035 (ACFSN5_10035) - 2174272..2176185 (+) 1914 WP_165212937.1 ATP-binding cassette domain-containing protein -
  ACFSN5_RS10040 (ACFSN5_10040) - 2176624..2177181 (-) 558 WP_165212939.1 DNA-3-methyladenine glycosylase I -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40962.57 Da        Isoelectric Point: 4.8451

>NTDB_id=1067696 ACFSN5_RS10025 WP_165212933.1 2171599..2172741(-) (recA) [Streptococcus sp. ZJ 1593]
MAKKAKKTDEITKKFGDERKKALDNALKTIEKDFGKGAIMKLGERADQKVQVMSSGSLALDIALGVGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGEQKDSSIGKETKIKVVKNKVAPPFKVAQVEIMYGEGISQTGELVKIATDLDIIQKAGAWYSYNGEKIGQGSE
NAKKYLADHPEVFDEIDKKVRIKYGLVEDDQAVESQPDQVEEKEETEELSLDLDAIEIEE

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=1067696 ACFSN5_RS10025 WP_165212933.1 2171599..2172741(-) (recA) [Streptococcus sp. ZJ 1593]
GTGGCAAAAAAAGCGAAAAAAACTGATGAAATCACTAAGAAATTTGGTGATGAACGTAAAAAAGCCTTGGATAATGCCTT
GAAAACTATCGAAAAGGATTTTGGTAAAGGGGCTATCATGAAGCTGGGTGAAAGGGCTGATCAAAAGGTGCAAGTCATGA
GCTCAGGCAGCCTGGCTTTAGACATTGCCCTCGGTGTTGGTGGCTATCCTAAGGGACGGATTATTGAAATCTATGGACCT
GAAAGTTCAGGTAAAACGACTGTTGCCTTGCATGCCGTTGCTCAAGCTCAAAAAGAAGGTGGTATCGCGGCTTTCATTGA
TGCGGAACACGCTCTTGATCCAAGCTATGCCGCAGCTCTGGGTGTCAATATTGATGAATTATTGCTGTCTCAACCAGACT
CAGGTGAACAAGGACTGGAAATTGCTGGTAAATTGATTGATTCAGGTGCTGTTGATTTAGTGGTTGTTGACTCTGTTGCA
GCCCTAGTTCCTCGTGCCGAAATTGATGGTGATATTGGTGACAGCCATGTTGGCCTCCAAGCTCGAATGATGAGTCAAGC
CATGCGTAAGCTTTCGGCTTCTATTAACAAAACCAAGACCATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTGGGG
TCATGTTTGGTAATCCAGAAACGACCCCTGGTGGCCGTGCCCTGAAATTCTACTCATCTGTTCGCCTTGACGTTCGTGGT
AACACCCAAATCAAGGGAACGGGAGAACAGAAGGACAGCAGCATCGGTAAGGAAACCAAGATTAAGGTCGTCAAGAACAA
GGTAGCCCCACCGTTTAAGGTTGCCCAAGTCGAAATCATGTATGGAGAAGGAATTTCTCAGACTGGTGAGTTAGTCAAAA
TCGCAACAGATCTCGATATTATTCAAAAAGCTGGAGCTTGGTATTCTTATAATGGTGAAAAGATTGGCCAAGGGTCAGAA
AATGCTAAAAAATATTTGGCCGATCACCCAGAAGTCTTTGATGAAATTGATAAGAAAGTTCGCATCAAGTACGGCCTCGT
TGAAGATGATCAGGCTGTAGAAAGCCAACCAGATCAAGTAGAAGAGAAGGAAGAGACAGAAGAATTATCCCTTGATCTCG
ATGCTATCGAGATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

87.664

100

0.879
  recA Streptococcus mutans UA159

86.423

100

0.871
  recA Streptococcus pneumoniae R6

84.416

100

0.855
  recA Streptococcus pneumoniae TIGR4

84.416

100

0.855
  recA Streptococcus pneumoniae Rx1

84.416

100

0.855
  recA Streptococcus pneumoniae D39

84.416

100

0.855
  recA Streptococcus mitis SK321

85.302

100

0.855
  recA Streptococcus mitis NCTC 12261

84.777

100

0.85
  recA Lactococcus lactis subsp. cremoris KW2

76.857

92.105

0.708
  recA Latilactobacillus sakei subsp. sakei 23K

72.424

86.842

0.629
  recA Bacillus subtilis subsp. subtilis str. 168

69.909

86.579

0.605
  recA Acinetobacter baumannii D1279779

59.04

93.158

0.55
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.142

87.105

0.55
  recA Neisseria gonorrhoeae MS11

62.538

87.105

0.545
  recA Neisseria gonorrhoeae MS11

62.538

87.105

0.545
  recA Neisseria gonorrhoeae strain FA1090

62.538

87.105

0.545
  recA Acinetobacter baylyi ADP1

58.807

92.632

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.777

85

0.542
  recA Glaesserella parasuis strain SC1401

60.294

89.474

0.539
  recA Vibrio cholerae strain A1552

60.923

85.526

0.521
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.923

85.526

0.521
  recA Helicobacter pylori strain NCTC11637

55.301

91.842

0.508
  recA Helicobacter pylori 26695

55.301

91.842

0.508
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.006

87.105

0.505
  recA Pseudomonas stutzeri DSM 10701

57.798

86.053

0.497
  recA Ralstonia pseudosolanacearum GMI1000

59.621

83.421

0.497

Multiple sequence alignment