Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACHFB9_RS00160 Genome accession   NZ_CP172404
Coordinates   28786..29817 (-) Length   343 a.a.
NCBI ID   WP_417068953.1    Uniprot ID   -
Organism   Niveibacterium terrae strain 24SJ04S-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23786..34817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFB9_RS00125 (ACHFB9_00125) - 24056..24298 (-) 243 WP_417068946.1 PsiF family protein -
  ACHFB9_RS00130 (ACHFB9_00130) hprK 24343..25269 (-) 927 WP_417068947.1 HPr(Ser) kinase/phosphatase -
  ACHFB9_RS00135 (ACHFB9_00135) ptsN 25256..25723 (-) 468 WP_417068948.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ACHFB9_RS00140 (ACHFB9_00140) hpf 25796..26125 (-) 330 WP_417068949.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACHFB9_RS00145 (ACHFB9_00145) rpoN/rpoN1 26137..27591 (-) 1455 WP_417068950.1 RNA polymerase factor sigma-54 Machinery gene
  ACHFB9_RS00150 (ACHFB9_00150) lptB 27605..28327 (-) 723 WP_417068951.1 LPS export ABC transporter ATP-binding protein -
  ACHFB9_RS00155 (ACHFB9_00155) recX 28314..28763 (-) 450 WP_417068952.1 recombination regulator RecX -
  ACHFB9_RS00160 (ACHFB9_00160) recA 28786..29817 (-) 1032 WP_417068953.1 recombinase RecA Machinery gene
  ACHFB9_RS00165 (ACHFB9_00165) mutY 29914..30945 (-) 1032 WP_417068954.1 A/G-specific adenine glycosylase -
  ACHFB9_RS00170 (ACHFB9_00170) - 30942..32018 (-) 1077 WP_417068955.1 VanZ family protein -
  ACHFB9_RS00175 (ACHFB9_00175) - 32196..33209 (+) 1014 WP_417068956.1 alpha/beta hydrolase-fold protein -
  ACHFB9_RS00180 (ACHFB9_00180) - 33238..34788 (-) 1551 WP_417068957.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36803.09 Da        Isoelectric Point: 5.1799

>NTDB_id=1067403 ACHFB9_RS00160 WP_417068953.1 28786..29817(-) (recA) [Niveibacterium terrae strain 24SJ04S-2]
MDDNKAKALQAALTQIEKQFGKGSIMRLGDGEVESDIQAVSTGSLGLDIALGIGGLPRGRVIEIYGPESSGKTTLTLQAI
AEMQKVGGTAAFIDAEHALDVVYAQKLGVNIGDLLISQPDTGEQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTGNIKRTNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGTIKKGDEVVGS
ETKVKVVKNKVAPPFKEARFDILYGEGISREGEIIDMGVEQRFVDKSGAWYAYNGEKIGQGKDNAREYLREHKDVAREIE
NKIRTALNLPALAGAAASPEAEA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=1067403 ACHFB9_RS00160 WP_417068953.1 28786..29817(-) (recA) [Niveibacterium terrae strain 24SJ04S-2]
ATGGACGACAACAAAGCCAAGGCCCTACAGGCTGCGCTGACGCAGATCGAGAAGCAGTTCGGCAAGGGTTCGATCATGCG
GTTGGGCGACGGCGAAGTCGAATCCGACATCCAAGCGGTTTCGACCGGCTCGCTCGGACTGGACATCGCGCTTGGCATCG
GCGGTCTGCCGCGCGGTCGCGTCATCGAAATCTACGGCCCCGAGTCCTCGGGCAAGACAACACTGACCCTGCAGGCGATC
GCGGAAATGCAGAAGGTCGGCGGCACCGCCGCCTTCATCGACGCCGAACACGCGCTCGACGTGGTCTATGCGCAGAAGCT
GGGCGTCAATATCGGCGATCTGCTGATCTCGCAGCCGGACACCGGCGAGCAGGCGCTCGAGATCGCCGACATGCTGGTGC
GCTCGGGCGGCGTCGATATCGTCGTCATCGACTCGGTCGCGGCACTGACGCCCAAGGCCGAAATCGAAGGCGAGATGGGC
GACCAGCTTCCCGGCCTGCAGGCCCGTCTGATGAGCCAGGCTCTGCGCAAGCTGACCGGCAACATCAAGCGCACGAACAC
GATGGTCATCTTCATCAACCAGATCCGGATGAAGATCGGCGTGATGTTCGGCAACCCCGAGACCACGACCGGCGGCAACG
CGCTGAAGTTCTACTCTTCGGTTCGCCTCGACATCCGCCGCACCGGCACGATCAAGAAGGGCGACGAAGTGGTCGGCTCC
GAGACCAAGGTCAAGGTCGTCAAGAACAAGGTTGCGCCTCCGTTCAAGGAAGCCCGCTTCGACATCCTCTACGGAGAGGG
CATCTCGCGCGAAGGCGAGATCATCGACATGGGCGTCGAACAGCGCTTCGTCGACAAGAGCGGAGCCTGGTACGCCTACA
ACGGCGAGAAGATCGGCCAGGGCAAGGACAACGCGCGCGAATACCTGCGTGAGCACAAGGACGTCGCGCGCGAGATCGAA
AACAAGATCCGCACCGCACTGAATCTGCCGGCACTGGCCGGAGCGGCGGCGAGTCCCGAAGCCGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.511

95.335

0.758
  recA Pseudomonas stutzeri DSM 10701

72.515

99.708

0.723
  recA Acinetobacter baylyi ADP1

72.222

99.708

0.72
  recA Acinetobacter baumannii D1279779

73.433

97.668

0.717
  recA Neisseria gonorrhoeae MS11

72.256

95.627

0.691
  recA Neisseria gonorrhoeae strain FA1090

72.256

95.627

0.691
  recA Neisseria gonorrhoeae MS11

72.256

95.627

0.691
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.818

96.21

0.691
  recA Vibrio cholerae strain A1552

71.818

96.21

0.691
  recA Glaesserella parasuis strain SC1401

71.385

94.752

0.676
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

95.918

0.653
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.14

100

0.641
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.559

96.501

0.633
  recA Helicobacter pylori strain NCTC11637

65.854

95.627

0.63
  recA Helicobacter pylori 26695

65.549

95.627

0.627
  recA Latilactobacillus sakei subsp. sakei 23K

64.832

95.335

0.618
  recA Streptococcus pneumoniae TIGR4

62.31

95.918

0.598
  recA Streptococcus pneumoniae Rx1

62.31

95.918

0.598
  recA Streptococcus pneumoniae D39

62.31

95.918

0.598
  recA Streptococcus pneumoniae R6

62.31

95.918

0.598
  recA Lactococcus lactis subsp. cremoris KW2

62.691

95.335

0.598
  recA Streptococcus mitis SK321

61.702

95.918

0.592
  recA Streptococcus pyogenes NZ131

61.398

95.918

0.589
  recA Streptococcus mitis NCTC 12261

61.398

95.918

0.589
  recA Streptococcus mutans UA159

60.725

96.501

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.568

94.461

0.563

Multiple sequence alignment