Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACHFB9_RS00145 Genome accession   NZ_CP172404
Coordinates   26137..27591 (-) Length   484 a.a.
NCBI ID   WP_417068950.1    Uniprot ID   -
Organism   Niveibacterium terrae strain 24SJ04S-2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 21137..32591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFB9_RS00115 (ACHFB9_00115) - 21650..22063 (+) 414 WP_417068944.1 Spy/CpxP family protein refolding chaperone -
  ACHFB9_RS00120 (ACHFB9_00120) dsbD 22232..24001 (-) 1770 WP_417068945.1 protein-disulfide reductase DsbD -
  ACHFB9_RS00125 (ACHFB9_00125) - 24056..24298 (-) 243 WP_417068946.1 PsiF family protein -
  ACHFB9_RS00130 (ACHFB9_00130) hprK 24343..25269 (-) 927 WP_417068947.1 HPr(Ser) kinase/phosphatase -
  ACHFB9_RS00135 (ACHFB9_00135) ptsN 25256..25723 (-) 468 WP_417068948.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ACHFB9_RS00140 (ACHFB9_00140) hpf 25796..26125 (-) 330 WP_417068949.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACHFB9_RS00145 (ACHFB9_00145) rpoN/rpoN1 26137..27591 (-) 1455 WP_417068950.1 RNA polymerase factor sigma-54 Machinery gene
  ACHFB9_RS00150 (ACHFB9_00150) lptB 27605..28327 (-) 723 WP_417068951.1 LPS export ABC transporter ATP-binding protein -
  ACHFB9_RS00155 (ACHFB9_00155) recX 28314..28763 (-) 450 WP_417068952.1 recombination regulator RecX -
  ACHFB9_RS00160 (ACHFB9_00160) recA 28786..29817 (-) 1032 WP_417068953.1 recombinase RecA Machinery gene
  ACHFB9_RS00165 (ACHFB9_00165) mutY 29914..30945 (-) 1032 WP_417068954.1 A/G-specific adenine glycosylase -
  ACHFB9_RS00170 (ACHFB9_00170) - 30942..32018 (-) 1077 WP_417068955.1 VanZ family protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 54105.97 Da        Isoelectric Point: 4.7466

>NTDB_id=1067402 ACHFB9_RS00145 WP_417068950.1 26137..27591(-) (rpoN/rpoN1) [Niveibacterium terrae strain 24SJ04S-2]
MKPSLQLRISQQLALTPQLQQSIKLLQLSTLELSSEIEKMLLENPLLERDDDDNNTDTWGHTSGDASSEKSAEREKTERE
EFSGESDSTGSSDSDYQEWSSENAGTGSSGSRDDDDDTDFQEFRAAQTSLSEHLEGQIGLIAFSDRDRDLVRFLIEALDE
DGYLTQPLEELMDLIPEEAGVELEELQIALAHLQNLDPAGIGARSPGECLALQLRCQEACPDRDAAITIVTEHLELLAAR
DFTRLKRLLACSEETLRAAHLRVCALDPHPGARFAALEARYIVPDVIVRKIRGRWGVMLNPDAMPKLRINQLYAGILQQH
RGSSASLSSQLQEARWMIKNVQQRFDTILRVSQAIVDRQRQFFDYGDVAMRPLTLREIAEQLELHESTISRVTTQKYMAT
PRGILELKYFFGSHVATDSGGACSATAIRALIRQLVAAEDRKKPLSDARIAELLGQQGIVVARRTIAKYREALNIPPVSQ
RKTI

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=1067402 ACHFB9_RS00145 WP_417068950.1 26137..27591(-) (rpoN/rpoN1) [Niveibacterium terrae strain 24SJ04S-2]
ATGAAACCTTCACTCCAGCTCCGTATCTCGCAACAGCTCGCGCTGACCCCGCAGCTGCAGCAGTCGATCAAGCTTCTGCA
GCTCTCGACCCTGGAGCTGAGCAGTGAAATCGAAAAGATGCTGCTCGAGAACCCGCTGCTCGAGCGCGACGACGACGATA
ACAACACGGACACCTGGGGGCACACCAGCGGCGATGCTTCCAGCGAAAAGAGCGCCGAGCGCGAGAAGACTGAACGGGAA
GAGTTCAGCGGCGAGAGCGATAGCACGGGAAGTTCCGATAGCGACTACCAGGAATGGAGCAGCGAAAACGCCGGAACGGG
AAGCAGCGGCAGCCGCGACGACGATGACGACACGGACTTCCAGGAGTTCCGGGCCGCCCAGACCAGCCTTTCCGAGCACC
TCGAAGGGCAGATCGGTCTGATCGCATTCTCGGATCGGGACCGCGATCTGGTCCGCTTCCTGATCGAAGCGCTCGACGAG
GACGGCTATCTGACCCAGCCGCTCGAAGAGCTGATGGATCTGATCCCCGAGGAAGCAGGAGTCGAACTCGAAGAGCTGCA
GATCGCACTCGCTCATCTGCAGAACCTCGACCCGGCCGGAATCGGCGCGCGCAGCCCCGGTGAATGCCTCGCGCTGCAGC
TGCGCTGCCAGGAAGCCTGCCCGGATCGCGACGCCGCAATAACCATTGTCACCGAACATCTGGAGTTGCTTGCCGCGCGC
GACTTCACGCGCCTGAAACGCCTGCTGGCTTGTTCCGAGGAAACTCTCCGCGCGGCCCATCTGCGAGTCTGCGCGCTCGA
TCCTCATCCGGGCGCGCGCTTCGCCGCGCTCGAAGCACGCTACATCGTTCCAGATGTGATCGTGCGCAAAATCCGTGGCC
GTTGGGGCGTTATGCTGAACCCCGATGCGATGCCGAAATTGCGGATCAACCAGCTCTACGCAGGAATCCTGCAACAGCAT
CGCGGATCGAGCGCATCGCTCTCCTCCCAGCTGCAGGAAGCCAGGTGGATGATCAAGAACGTGCAGCAACGCTTCGACAC
GATCCTGAGGGTTTCACAGGCCATCGTTGACCGCCAGCGTCAGTTCTTCGATTATGGCGACGTGGCCATGCGTCCTCTGA
CCCTGCGCGAAATCGCCGAGCAACTCGAACTGCACGAATCGACGATTTCCCGAGTGACGACGCAGAAATACATGGCTACA
CCAAGGGGGATACTGGAACTCAAATATTTTTTCGGCAGCCATGTCGCCACGGATTCAGGTGGCGCATGCTCGGCAACGGC
GATTCGCGCCTTGATTCGCCAGCTGGTTGCCGCGGAGGATCGCAAAAAACCGCTTTCCGACGCGCGCATCGCCGAACTTC
TTGGCCAGCAGGGCATCGTTGTCGCGCGCAGAACCATCGCAAAGTACCGCGAAGCGCTCAACATCCCGCCGGTCAGTCAG
CGCAAGACGATCTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(327-482)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(120-313)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

55.777

100

0.579

Multiple sequence alignment