Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | ACF3N8_RS09260 | Genome accession | NZ_CP171119 |
| Coordinates | 1911630..1912673 (-) | Length | 347 a.a. |
| NCBI ID | WP_009381780.1 | Uniprot ID | K9AT88 |
| Organism | Staphylococcus massiliensis strain WGS1515 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1909936..1989007 | 1911630..1912673 | within | 0 |
Gene organization within MGE regions
Location: 1909936..1989007
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACF3N8_RS09260 (ACF3N8_09260) | recA | 1911630..1912673 (-) | 1044 | WP_009381780.1 | recombinase RecA | Machinery gene |
| ACF3N8_RS09265 (ACF3N8_09265) | - | 1912832..1913983 (-) | 1152 | WP_009381779.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| ACF3N8_RS09270 (ACF3N8_09270) | pgsA | 1914119..1914694 (-) | 576 | WP_009381774.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| ACF3N8_RS09275 (ACF3N8_09275) | - | 1914746..1915141 (-) | 396 | WP_238101797.1 | helix-turn-helix domain-containing protein | - |
| ACF3N8_RS09280 (ACF3N8_09280) | - | 1915154..1915993 (-) | 840 | WP_009381771.1 | DUF3388 domain-containing protein | - |
| ACF3N8_RS09285 (ACF3N8_09285) | ymfI | 1916098..1916802 (-) | 705 | WP_009381769.1 | elongation factor P 5-aminopentanone reductase | - |
| ACF3N8_RS09290 (ACF3N8_09290) | yfmH | 1916799..1918088 (-) | 1290 | WP_238101796.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| ACF3N8_RS09295 (ACF3N8_09295) | yfmF | 1918081..1919343 (-) | 1263 | WP_037556751.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| ACF3N8_RS09300 (ACF3N8_09300) | - | 1919392..1920108 (-) | 717 | WP_009381766.1 | GntR family transcriptional regulator | - |
| ACF3N8_RS09305 (ACF3N8_09305) | - | 1920111..1922477 (-) | 2367 | WP_238100707.1 | DNA translocase FtsK | - |
| ACF3N8_RS09310 (ACF3N8_09310) | rnjB | 1922639..1924312 (-) | 1674 | WP_238100708.1 | ribonuclease J2 | - |
| ACF3N8_RS09315 (ACF3N8_09315) | pnp | 1924617..1926713 (-) | 2097 | WP_238100709.1 | polyribonucleotide nucleotidyltransferase | - |
| ACF3N8_RS09320 (ACF3N8_09320) | rpsO | 1926879..1927148 (-) | 270 | WP_009381760.1 | 30S ribosomal protein S15 | - |
| ACF3N8_RS09325 (ACF3N8_09325) | - | 1927258..1928232 (-) | 975 | WP_238093562.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| ACF3N8_RS09330 (ACF3N8_09330) | truB | 1928245..1929162 (-) | 918 | WP_238100710.1 | tRNA pseudouridine(55) synthase TruB | - |
| ACF3N8_RS09335 (ACF3N8_09335) | rbfA | 1929240..1929587 (-) | 348 | WP_009381754.1 | 30S ribosome-binding factor RbfA | - |
| ACF3N8_RS09340 (ACF3N8_09340) | - | 1929651..1929965 (-) | 315 | WP_009381752.1 | hypothetical protein | - |
| ACF3N8_RS09345 (ACF3N8_09345) | infB | 1930280..1932391 (-) | 2112 | WP_238093564.1 | translation initiation factor IF-2 | - |
| ACF3N8_RS09350 (ACF3N8_09350) | - | 1932396..1932713 (-) | 318 | WP_009381749.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| ACF3N8_RS09355 (ACF3N8_09355) | rnpM | 1932710..1932994 (-) | 285 | WP_009381746.1 | RNase P modulator RnpM | - |
| ACF3N8_RS09360 (ACF3N8_09360) | nusA | 1933011..1934282 (-) | 1272 | WP_009381745.1 | transcription termination factor NusA | - |
| ACF3N8_RS09365 (ACF3N8_09365) | rimP | 1934304..1934771 (-) | 468 | WP_009381744.1 | ribosome maturation factor RimP | - |
| ACF3N8_RS09370 (ACF3N8_09370) | - | 1934918..1939234 (-) | 4317 | WP_392449851.1 | PolC-type DNA polymerase III | - |
| ACF3N8_RS09375 (ACF3N8_09375) | - | 1939905..1941608 (-) | 1704 | WP_392449852.1 | proline--tRNA ligase | - |
| ACF3N8_RS09380 (ACF3N8_09380) | rseP | 1941627..1942883 (-) | 1257 | WP_238100743.1 | RIP metalloprotease RseP | - |
| ACF3N8_RS09385 (ACF3N8_09385) | - | 1942912..1944042 (-) | 1131 | WP_009381738.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| ACF3N8_RS09390 (ACF3N8_09390) | - | 1944057..1944839 (-) | 783 | WP_009381736.1 | phosphatidate cytidylyltransferase | - |
| ACF3N8_RS09395 (ACF3N8_09395) | - | 1944855..1945613 (-) | 759 | WP_009381734.1 | isoprenyl transferase | - |
| ACF3N8_RS09400 (ACF3N8_09400) | frr | 1945767..1946321 (-) | 555 | WP_009381732.1 | ribosome recycling factor | - |
| ACF3N8_RS09405 (ACF3N8_09405) | pyrH | 1946337..1947059 (-) | 723 | WP_009381731.1 | UMP kinase | - |
| ACF3N8_RS09410 (ACF3N8_09410) | tsf | 1947220..1948101 (-) | 882 | WP_009381729.1 | translation elongation factor Ts | - |
| ACF3N8_RS09415 (ACF3N8_09415) | rpsB | 1948187..1948972 (-) | 786 | WP_009381728.1 | 30S ribosomal protein S2 | - |
| ACF3N8_RS09420 (ACF3N8_09420) | codY | 1949134..1949907 (-) | 774 | WP_238100715.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| ACF3N8_RS09425 (ACF3N8_09425) | hslU | 1949932..1951335 (-) | 1404 | WP_238100716.1 | ATP-dependent protease ATPase subunit HslU | - |
| ACF3N8_RS09430 (ACF3N8_09430) | hslV | 1951351..1951893 (-) | 543 | WP_009381722.1 | ATP-dependent protease subunit HslV | - |
| ACF3N8_RS09435 (ACF3N8_09435) | xerC | 1951893..1952786 (-) | 894 | WP_238101794.1 | tyrosine recombinase XerC | - |
| ACF3N8_RS09440 (ACF3N8_09440) | trmFO | 1952917..1954224 (-) | 1308 | WP_017176563.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| ACF3N8_RS09445 (ACF3N8_09445) | topA | 1954330..1956417 (-) | 2088 | WP_238100744.1 | type I DNA topoisomerase | - |
| ACF3N8_RS09450 (ACF3N8_09450) | dprA | 1956496..1957374 (-) | 879 | WP_009381718.1 | DNA-processing protein DprA | Machinery gene |
| ACF3N8_RS09455 (ACF3N8_09455) | sucD | 1957567..1958475 (-) | 909 | WP_392449853.1 | succinate--CoA ligase subunit alpha | - |
| ACF3N8_RS09460 (ACF3N8_09460) | sucC | 1958497..1959663 (-) | 1167 | WP_009381716.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ACF3N8_RS09465 (ACF3N8_09465) | - | 1959951..1960280 (+) | 330 | WP_009381712.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| ACF3N8_RS09470 (ACF3N8_09470) | - | 1960369..1960893 (-) | 525 | WP_238101791.1 | hypothetical protein | - |
| ACF3N8_RS09475 (ACF3N8_09475) | - | 1961073..1961855 (-) | 783 | WP_009381710.1 | ribonuclease HII | - |
| ACF3N8_RS09480 (ACF3N8_09480) | ylqF | 1961859..1962725 (-) | 867 | WP_238093572.1 | ribosome biogenesis GTPase YlqF | - |
| ACF3N8_RS09485 (ACF3N8_09485) | - | 1962983..1963363 (+) | 381 | WP_009381708.1 | GtrA family protein | - |
| ACF3N8_RS09490 (ACF3N8_09490) | - | 1963384..1965984 (+) | 2601 | WP_392449854.1 | YfhO family protein | - |
| ACF3N8_RS09495 (ACF3N8_09495) | - | 1965981..1968587 (+) | 2607 | WP_009381707.1 | YfhO family protein | - |
| ACF3N8_RS09500 (ACF3N8_09500) | - | 1968666..1969808 (-) | 1143 | WP_392449855.1 | trans-sulfuration enzyme family protein | - |
| ACF3N8_RS09505 (ACF3N8_09505) | - | 1969832..1971211 (-) | 1380 | WP_392449856.1 | APC family permease | - |
| ACF3N8_RS09510 (ACF3N8_09510) | - | 1971215..1971946 (-) | 732 | WP_009381704.1 | gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | - |
| ACF3N8_RS09515 (ACF3N8_09515) | arsC | 1972181..1972582 (-) | 402 | WP_009381703.1 | arsenate reductase (thioredoxin) | - |
| ACF3N8_RS09520 (ACF3N8_09520) | arsB | 1972600..1973889 (-) | 1290 | WP_238093577.1 | arsenite efflux transporter membrane subunit ArsB | - |
| ACF3N8_RS09525 (ACF3N8_09525) | - | 1973893..1974207 (-) | 315 | WP_017176566.1 | helix-turn-helix transcriptional regulator | - |
| ACF3N8_RS09530 (ACF3N8_09530) | rplS | 1974966..1975319 (-) | 354 | WP_009381700.1 | 50S ribosomal protein L19 | - |
| ACF3N8_RS09535 (ACF3N8_09535) | trmD | 1975428..1976162 (-) | 735 | WP_009381699.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| ACF3N8_RS09540 (ACF3N8_09540) | rimM | 1976152..1976664 (-) | 513 | WP_009381698.1 | ribosome maturation factor RimM | - |
| ACF3N8_RS09545 (ACF3N8_09545) | rpsP | 1976756..1977031 (-) | 276 | WP_009381697.1 | 30S ribosomal protein S16 | - |
| ACF3N8_RS09550 (ACF3N8_09550) | - | 1977130..1977774 (-) | 645 | WP_392449857.1 | ABC transporter ATP-binding protein | - |
| ACF3N8_RS09555 (ACF3N8_09555) | - | 1977767..1979794 (-) | 2028 | WP_238101786.1 | bacteriocin-associated protein | - |
| ACF3N8_RS09560 (ACF3N8_09560) | - | 1980005..1980472 (-) | 468 | WP_009381694.1 | N-acetyltransferase | - |
| ACF3N8_RS09565 (ACF3N8_09565) | ffh | 1980587..1981960 (-) | 1374 | WP_009381693.1 | signal recognition particle protein | - |
| ACF3N8_RS09570 (ACF3N8_09570) | - | 1981974..1982309 (-) | 336 | WP_009381692.1 | putative DNA-binding protein | - |
| ACF3N8_RS09575 (ACF3N8_09575) | ftsY | 1982293..1983603 (-) | 1311 | WP_009381691.1 | signal recognition particle-docking protein FtsY | - |
| ACF3N8_RS09580 (ACF3N8_09580) | smc | 1983603..1987163 (-) | 3561 | WP_392449858.1 | chromosome segregation protein SMC | - |
| ACF3N8_RS09585 (ACF3N8_09585) | rnc | 1987177..1987875 (-) | 699 | WP_392450444.1 | ribonuclease III | - |
| ACF3N8_RS09590 (ACF3N8_09590) | - | 1988008..1988241 (-) | 234 | WP_009381688.1 | acyl carrier protein | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 37595.53 Da Isoelectric Point: 5.0865
>NTDB_id=1060240 ACF3N8_RS09260 WP_009381780.1 1911630..1912673(-) (recA) [Staphylococcus massiliensis strain WGS1515]
MSNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSSGSVTLDNALGVGGYPKGRIIEVYGPESSGKTTVALHAIA
EVQKNGGIAAFIDAEHALDPVYAEALGVDINNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
AHVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKLKVVKNKVAPPFRIAEVDIMYGKGISKEGEIIDLGVQNDIIDKSGAWYSYNGDRMGQGKENVKNYLKENPEIMNEIDQ
KLRETLGIKDGDVEETEENESPTLFDE
MSNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSSGSVTLDNALGVGGYPKGRIIEVYGPESSGKTTVALHAIA
EVQKNGGIAAFIDAEHALDPVYAEALGVDINNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
AHVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKLKVVKNKVAPPFRIAEVDIMYGKGISKEGEIIDLGVQNDIIDKSGAWYSYNGDRMGQGKENVKNYLKENPEIMNEIDQ
KLRETLGIKDGDVEETEENESPTLFDE
Nucleotide
Download Length: 1044 bp
>NTDB_id=1060240 ACF3N8_RS09260 WP_009381780.1 1911630..1912673(-) (recA) [Staphylococcus massiliensis strain WGS1515]
TTGAGTAATGAACGTCAAAAGGCTTTAGATACAGTCATTAAGAATATGGAAAAATCTTTCGGTAAAGGTGCAGTTATGAA
ACTAGGTGACAACAAAGGTCGCCGTGTTTCTAGTGTATCAAGTGGTTCTGTAACGCTTGATAACGCGTTAGGTGTAGGCG
GTTATCCTAAAGGCCGTATCATAGAGGTATATGGTCCTGAAAGTTCAGGTAAAACAACAGTTGCATTACATGCTATCGCT
GAAGTTCAGAAGAATGGCGGTATTGCAGCATTTATCGATGCCGAACACGCTTTAGACCCAGTTTATGCTGAAGCATTAGG
TGTAGACATAAATAATTTATACCTATCTCAACCAGACCACGGTGAGCAAGGTTTAGAAATCGCTGAAGCTTTCGTTCGTA
GTGGTGCCGTTGACATTGTCGTTGTCGACTCTGTAGCTGCTTTAACACCTAAAGCAGAAATTGAAGGTGAGATGGGCGAC
GCGCACGTTGGTTTACAAGCCCGCTTAATGTCTCAAGCGCTACGTAAACTTTCTGGTGCTATTTCAAAATCAAATACGAC
TGCTATCTTTATCAACCAAATCCGTGAAAAAGTTGGCGTTATGTTTGGTAATCCTGAAACAACGCCTGGTGGCCGTGCAC
TTAAATTCTATAGTTCAGTTCGTTTAGAAGTTAGACGTGCCGAACAACTTAAACAAGGTCAAGATATCGTAGGTAACCGT
ACGAAACTTAAAGTTGTTAAGAACAAAGTTGCACCACCATTTAGAATTGCTGAAGTTGATATTATGTATGGTAAAGGTAT
CTCTAAAGAAGGCGAAATCATCGATTTAGGTGTTCAAAACGATATTATCGATAAATCAGGTGCTTGGTATTCTTATAATG
GTGACCGCATGGGTCAAGGTAAAGAAAATGTTAAAAACTACTTAAAAGAAAATCCTGAAATTATGAACGAAATCGATCAA
AAACTACGTGAAACATTAGGAATTAAAGACGGTGATGTTGAAGAAACAGAAGAAAATGAATCACCAACGTTATTTGACGA
ATAA
TTGAGTAATGAACGTCAAAAGGCTTTAGATACAGTCATTAAGAATATGGAAAAATCTTTCGGTAAAGGTGCAGTTATGAA
ACTAGGTGACAACAAAGGTCGCCGTGTTTCTAGTGTATCAAGTGGTTCTGTAACGCTTGATAACGCGTTAGGTGTAGGCG
GTTATCCTAAAGGCCGTATCATAGAGGTATATGGTCCTGAAAGTTCAGGTAAAACAACAGTTGCATTACATGCTATCGCT
GAAGTTCAGAAGAATGGCGGTATTGCAGCATTTATCGATGCCGAACACGCTTTAGACCCAGTTTATGCTGAAGCATTAGG
TGTAGACATAAATAATTTATACCTATCTCAACCAGACCACGGTGAGCAAGGTTTAGAAATCGCTGAAGCTTTCGTTCGTA
GTGGTGCCGTTGACATTGTCGTTGTCGACTCTGTAGCTGCTTTAACACCTAAAGCAGAAATTGAAGGTGAGATGGGCGAC
GCGCACGTTGGTTTACAAGCCCGCTTAATGTCTCAAGCGCTACGTAAACTTTCTGGTGCTATTTCAAAATCAAATACGAC
TGCTATCTTTATCAACCAAATCCGTGAAAAAGTTGGCGTTATGTTTGGTAATCCTGAAACAACGCCTGGTGGCCGTGCAC
TTAAATTCTATAGTTCAGTTCGTTTAGAAGTTAGACGTGCCGAACAACTTAAACAAGGTCAAGATATCGTAGGTAACCGT
ACGAAACTTAAAGTTGTTAAGAACAAAGTTGCACCACCATTTAGAATTGCTGAAGTTGATATTATGTATGGTAAAGGTAT
CTCTAAAGAAGGCGAAATCATCGATTTAGGTGTTCAAAACGATATTATCGATAAATCAGGTGCTTGGTATTCTTATAATG
GTGACCGCATGGGTCAAGGTAAAGAAAATGTTAAAAACTACTTAAAAGAAAATCCTGAAATTATGAACGAAATCGATCAA
AAACTACGTGAAACATTAGGAATTAAAGACGGTGATGTTGAAGAAACAGAAGAAAATGAATCACCAACGTTATTTGACGA
ATAA
Similar proteins
Only experimentally validated proteins are listed.