Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACF3N8_RS09450 Genome accession   NZ_CP171119
Coordinates   1956496..1957374 (-) Length   292 a.a.
NCBI ID   WP_009381718.1    Uniprot ID   -
Organism   Staphylococcus massiliensis strain WGS1515     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1951496..1962374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3N8_RS09435 (ACF3N8_09435) xerC 1951893..1952786 (-) 894 WP_238101794.1 tyrosine recombinase XerC -
  ACF3N8_RS09440 (ACF3N8_09440) trmFO 1952917..1954224 (-) 1308 WP_017176563.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACF3N8_RS09445 (ACF3N8_09445) topA 1954330..1956417 (-) 2088 WP_238100744.1 type I DNA topoisomerase -
  ACF3N8_RS09450 (ACF3N8_09450) dprA 1956496..1957374 (-) 879 WP_009381718.1 DNA-processing protein DprA Machinery gene
  ACF3N8_RS09455 (ACF3N8_09455) sucD 1957567..1958475 (-) 909 WP_392449853.1 succinate--CoA ligase subunit alpha -
  ACF3N8_RS09460 (ACF3N8_09460) sucC 1958497..1959663 (-) 1167 WP_009381716.1 ADP-forming succinate--CoA ligase subunit beta -
  ACF3N8_RS09465 (ACF3N8_09465) - 1959951..1960280 (+) 330 WP_009381712.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  ACF3N8_RS09470 (ACF3N8_09470) - 1960369..1960893 (-) 525 WP_238101791.1 hypothetical protein -
  ACF3N8_RS09475 (ACF3N8_09475) - 1961073..1961855 (-) 783 WP_009381710.1 ribonuclease HII -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33460.36 Da        Isoelectric Point: 6.7728

>NTDB_id=1060242 ACF3N8_RS09450 WP_009381718.1 1956496..1957374(-) (dprA) [Staphylococcus massiliensis strain WGS1515]
MNQNLLLKLSYAHFSTRDIYKLLLQFHLSLDDELEIHNFFGDAPEDIPFQWKKKYQRFQTINIDHIRRNLELDHIHVLSI
EDQLYPENLREIYDAPLLLFVKGNLDCLKGLSQRGLSIVGSRNATEYTRRALDVICPEFKTLNLVIVSGLAKGADACAHE
MALKHQLNTVGVLGFGHQMHYPKETLDMRHWIETYHCTISEYPPFTKIAKFRFPERNRIISGVSNGVLVTEANQQSGALI
TIDQALDQNRNVYVLPGSMFNELTKGNMKRAKEGAKIVTEASDILEDYLTIS

Nucleotide


Download         Length: 879 bp        

>NTDB_id=1060242 ACF3N8_RS09450 WP_009381718.1 1956496..1957374(-) (dprA) [Staphylococcus massiliensis strain WGS1515]
TTGAATCAAAATTTATTATTAAAATTAAGCTACGCTCATTTTTCTACACGTGACATTTATAAACTTCTGTTACAATTCCA
CTTAAGTTTAGATGATGAATTAGAAATACATAACTTTTTTGGCGATGCCCCGGAAGATATTCCTTTTCAATGGAAGAAAA
AATACCAACGTTTCCAAACGATCAACATTGATCATATTCGTCGTAACCTTGAATTAGACCACATACATGTACTGTCCATA
GAAGATCAGTTATATCCTGAAAATTTGAGAGAAATATATGATGCACCTTTACTTTTATTTGTGAAAGGTAACCTCGATTG
CTTAAAAGGACTTTCTCAAAGAGGACTTAGTATAGTCGGGTCTCGTAACGCAACTGAATACACAAGACGAGCCTTAGACG
TTATATGTCCTGAGTTTAAAACTTTAAATTTAGTTATTGTTTCAGGTTTAGCTAAAGGAGCTGATGCTTGTGCACATGAA
ATGGCTCTAAAACATCAATTAAATACGGTTGGTGTATTGGGATTCGGTCATCAAATGCATTATCCTAAGGAAACGCTCGA
TATGCGACATTGGATTGAAACCTATCACTGCACCATTTCAGAATATCCGCCATTTACTAAAATAGCGAAGTTTCGTTTCC
CAGAGCGAAACCGTATTATAAGTGGCGTTTCTAATGGTGTTTTAGTCACGGAAGCTAACCAGCAAAGTGGCGCACTTATT
ACTATTGATCAAGCTTTAGATCAAAACCGAAATGTTTATGTGCTACCAGGCTCAATGTTTAATGAGTTAACGAAAGGCAA
TATGAAACGTGCGAAAGAAGGGGCGAAAATCGTTACAGAAGCGTCGGATATTTTAGAGGATTATCTTACAATATCTTAG

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

48.805

100

0.49
  dprA Staphylococcus aureus MW2

48.805

100

0.49
  dprA/cilB/dalA Streptococcus mitis SK321

37.809

96.918

0.366

Multiple sequence alignment