Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACF3OH_RS05970 Genome accession   NZ_CP171117
Coordinates   1122554..1123612 (+) Length   352 a.a.
NCBI ID   WP_204589084.1    Uniprot ID   -
Organism   Chryseomicrobium aureum strain WGS1526     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1117554..1128612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3OH_RS05945 (ACF3OH_05945) - 1118059..1118784 (+) 726 WP_392456310.1 SDR family NAD(P)-dependent oxidoreductase -
  ACF3OH_RS05950 (ACF3OH_05950) - 1118811..1119611 (+) 801 WP_204589080.1 DUF3388 domain-containing protein -
  ACF3OH_RS05955 (ACF3OH_05955) - 1119630..1120481 (+) 852 WP_392456313.1 RodZ domain-containing protein -
  ACF3OH_RS05960 (ACF3OH_05960) pgsA 1120539..1121117 (+) 579 WP_392456316.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACF3OH_RS05965 (ACF3OH_05965) cinA 1121130..1122383 (+) 1254 WP_392456319.1 competence/damage-inducible protein A Machinery gene
  ACF3OH_RS05970 (ACF3OH_05970) recA 1122554..1123612 (+) 1059 WP_204589084.1 recombinase RecA Machinery gene
  ACF3OH_RS05975 (ACF3OH_05975) rny 1123780..1125336 (+) 1557 WP_204589085.1 ribonuclease Y -
  ACF3OH_RS05980 (ACF3OH_05980) - 1125397..1126191 (+) 795 WP_204589086.1 TIGR00282 family metallophosphoesterase -
  ACF3OH_RS05985 (ACF3OH_05985) - 1126265..1126531 (+) 267 WP_204589087.1 stage V sporulation protein S -
  ACF3OH_RS05990 (ACF3OH_05990) - 1126707..1128446 (+) 1740 WP_204589088.1 2-oxoacid:acceptor oxidoreductase subunit alpha -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37908.00 Da        Isoelectric Point: 4.7799

>NTDB_id=1060165 ACF3OH_RS05970 WP_204589084.1 1122554..1123612(+) (recA) [Chryseomicrobium aureum strain WGS1526]
MADRKAALDMALKQIEKQFGKGSVMKLGEKTDREIQTSSSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAIAE
AQASGGTAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSNTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSTIRLEVRRAEAIKQGTDIMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISQEGEIIDMGSDLDIVQKSGSWYAYNDDRLGQGRENAKQFLKENESIKHTIASQ
IRASLGMAASSYTIAAHEEEEDEEFELVLDKE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1060165 ACF3OH_RS05970 WP_204589084.1 1122554..1123612(+) (recA) [Chryseomicrobium aureum strain WGS1526]
TTGGCAGATCGTAAAGCAGCCCTTGATATGGCTTTAAAACAAATAGAAAAACAGTTCGGTAAAGGTTCTGTTATGAAACT
TGGAGAAAAGACGGATCGTGAAATCCAGACATCTTCTAGTGGCTCATTAGCCCTTGATGCGGCTCTTGGTGTGGGTGGAT
ATCCACGTGGGCGTATCGTAGAAATTTACGGCCCTGAAAGCTCAGGTAAAACAACAGTAGCTCTCCATGCTATCGCAGAA
GCACAAGCGTCAGGTGGTACAGCAGCATTTATCGATGCTGAGCACGCACTTGACCCAGTGTATGCACAAAAATTAGGTGT
AAATATTGATGAGTTGCTTCTATCTCAACCGGATACAGGAGAACAAGCACTCGAAATTGCGGAAGCACTTGTACGCAGTG
GAGCAGTAGATATTTTAGTAATTGACTCCGTAGCCGCATTAGTTCCAAAAGCTGAGATTGAAGGTGAAATGGGAGATTCT
CACGTAGGTCTTCAAGCGCGTCTTATGTCTCAAGCTCTTCGTAAACTTTCAGGTGCTATCAATAAATCAAATACCATTGC
AATCTTTATTAACCAGATTCGTGAAAAAGTTGGTGTTATGTTTGGAAACCCTGAGGTTACTCCAGGTGGACGTGCGCTTA
AATTCTATAGCACAATCCGTCTAGAGGTCCGTCGTGCTGAAGCAATCAAGCAAGGGACAGACATTATGGGGAACAAAACG
AAAATTAAAGTAGTGAAAAACAAAGTAGCACCACCATTCCGTACAGCAGAAGTTGATATTATGTATGGGGAAGGGATTTC
ACAAGAAGGTGAAATCATCGATATGGGGTCCGATCTTGATATCGTTCAAAAAAGTGGTTCTTGGTATGCATACAACGATG
ACCGCTTAGGACAAGGTCGCGAAAATGCAAAACAATTCTTGAAAGAAAATGAGTCGATCAAGCATACGATTGCATCTCAA
ATTCGTGCTTCTCTTGGCATGGCTGCAAGTTCATACACGATTGCTGCACATGAAGAAGAGGAAGATGAAGAATTTGAATT
AGTTTTAGATAAAGAATAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.627

92.898

0.795
  recA Latilactobacillus sakei subsp. sakei 23K

75.153

92.614

0.696
  recA Streptococcus mutans UA159

65.266

100

0.662
  recA Streptococcus mitis NCTC 12261

64.266

100

0.659
  recA Streptococcus pyogenes NZ131

64.489

100

0.645
  recA Streptococcus pneumoniae D39

67.576

93.75

0.634
  recA Streptococcus pneumoniae Rx1

67.576

93.75

0.634
  recA Streptococcus pneumoniae R6

67.576

93.75

0.634
  recA Streptococcus pneumoniae TIGR4

67.576

93.75

0.634
  recA Streptococcus mitis SK321

67.273

93.75

0.631
  recA Lactococcus lactis subsp. cremoris KW2

65.758

93.75

0.616
  recA Acinetobacter baylyi ADP1

62.209

97.727

0.608
  recA Ralstonia pseudosolanacearum GMI1000

64.634

93.182

0.602
  recA Neisseria gonorrhoeae MS11

64.724

92.614

0.599
  recA Neisseria gonorrhoeae MS11

64.724

92.614

0.599
  recA Neisseria gonorrhoeae strain FA1090

64.724

92.614

0.599
  recA Helicobacter pylori strain NCTC11637

60.58

98.011

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.706

91.761

0.594
  recA Vibrio cholerae strain A1552

64.706

91.761

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.933

97.443

0.594
  recA Helicobacter pylori 26695

60.29

98.011

0.591
  recA Acinetobacter baumannii D1279779

59.77

98.864

0.591
  recA Pseudomonas stutzeri DSM 10701

64.396

91.761

0.591
  recA Glaesserella parasuis strain SC1401

60.882

96.591

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.614

93.466

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.568

92.045

0.548

Multiple sequence alignment