Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACF3OH_RS05965 Genome accession   NZ_CP171117
Coordinates   1121130..1122383 (+) Length   417 a.a.
NCBI ID   WP_392456319.1    Uniprot ID   -
Organism   Chryseomicrobium aureum strain WGS1526     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1116130..1127383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3OH_RS05940 (ACF3OH_05940) yfmH 1116777..1118072 (+) 1296 WP_392456308.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACF3OH_RS05945 (ACF3OH_05945) - 1118059..1118784 (+) 726 WP_392456310.1 SDR family NAD(P)-dependent oxidoreductase -
  ACF3OH_RS05950 (ACF3OH_05950) - 1118811..1119611 (+) 801 WP_204589080.1 DUF3388 domain-containing protein -
  ACF3OH_RS05955 (ACF3OH_05955) - 1119630..1120481 (+) 852 WP_392456313.1 RodZ domain-containing protein -
  ACF3OH_RS05960 (ACF3OH_05960) pgsA 1120539..1121117 (+) 579 WP_392456316.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACF3OH_RS05965 (ACF3OH_05965) cinA 1121130..1122383 (+) 1254 WP_392456319.1 competence/damage-inducible protein A Machinery gene
  ACF3OH_RS05970 (ACF3OH_05970) recA 1122554..1123612 (+) 1059 WP_204589084.1 recombinase RecA Machinery gene
  ACF3OH_RS05975 (ACF3OH_05975) rny 1123780..1125336 (+) 1557 WP_204589085.1 ribonuclease Y -
  ACF3OH_RS05980 (ACF3OH_05980) - 1125397..1126191 (+) 795 WP_204589086.1 TIGR00282 family metallophosphoesterase -
  ACF3OH_RS05985 (ACF3OH_05985) - 1126265..1126531 (+) 267 WP_204589087.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45739.39 Da        Isoelectric Point: 5.9081

>NTDB_id=1060164 ACF3OH_RS05965 WP_392456319.1 1121130..1122383(+) (cinA) [Chryseomicrobium aureum strain WGS1526]
MRAEIIAVGSELLLGQIVNTNARFISTQLAEMGITIHFHTVVGDNKGRLVEAIRIAEGRADLIIFSGGLGPTKDDLTKQT
IADHLHAKLVIDQQALSFIADFFAKRGRPMTDNNRQQALVLEGAQVLKNDNGMAPGMFYRTSTHTYILLPGPPKELEPMF
QFEAKPLLAEQVLDNQLIFSHVIRFYGIGEAELETELLDLIENQTNPTIAPLATDSEVTIRLTATGATEDEAWSAIKDVQ
AEILNRVGKYVYGYNNDSLAQKLKQTLIAHHLTISAAESMTAGLFQAELASIPGMAEALVGGVVVYNEETKIKHLGINKE
TIDTFTVVSREVAAEMAKKVREKFATDIGVSITGAAGPEGHGGQPAGTVWIGIAYKEEVHTYELHLAGMRNTNRIRAVKF
AIHYILRIIMNENRSNI

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=1060164 ACF3OH_RS05965 WP_392456319.1 1121130..1122383(+) (cinA) [Chryseomicrobium aureum strain WGS1526]
ATGCGCGCAGAAATTATTGCAGTAGGCTCAGAATTATTATTAGGTCAGATTGTGAATACGAATGCCCGCTTTATTTCTAC
GCAACTTGCTGAGATGGGAATCACTATTCATTTCCACACAGTAGTAGGTGACAATAAGGGGCGTCTTGTAGAGGCGATTC
GAATTGCTGAGGGTCGCGCTGACTTAATTATTTTTTCAGGTGGACTAGGACCTACAAAAGATGATTTGACGAAGCAGACA
ATTGCAGACCATTTACATGCAAAACTTGTAATTGATCAGCAAGCGTTATCATTTATTGCAGACTTTTTTGCGAAGCGAGG
ACGGCCTATGACGGATAATAATCGTCAGCAGGCATTGGTCCTTGAAGGGGCGCAAGTGTTGAAGAACGATAATGGGATGG
CGCCAGGGATGTTTTATCGAACTTCTACGCATACCTATATTTTACTTCCAGGACCCCCGAAAGAGTTAGAACCAATGTTT
CAGTTTGAAGCAAAGCCACTCTTAGCAGAACAAGTATTGGATAATCAACTCATTTTCTCCCACGTCATTCGTTTTTATGG
AATAGGAGAGGCAGAATTAGAGACGGAGTTGTTGGATTTAATTGAAAATCAAACAAATCCAACGATTGCTCCACTTGCTA
CGGATAGTGAAGTGACGATTCGATTGACAGCTACTGGTGCAACTGAAGATGAGGCTTGGAGTGCAATTAAAGACGTACAA
GCGGAAATTTTGAACCGCGTAGGAAAGTATGTGTACGGGTACAACAATGACTCATTGGCTCAAAAGCTAAAGCAAACATT
GATTGCACATCATCTCACGATTTCTGCTGCTGAGAGCATGACAGCAGGTTTGTTCCAAGCTGAACTCGCATCGATACCTG
GAATGGCTGAAGCACTGGTTGGTGGTGTCGTTGTCTACAACGAAGAAACTAAAATCAAGCATCTAGGCATAAATAAAGAG
ACAATCGATACATTTACAGTTGTGAGTCGAGAAGTAGCTGCTGAGATGGCCAAAAAGGTTCGTGAAAAGTTTGCAACCGA
TATCGGCGTTAGTATAACTGGTGCTGCAGGACCAGAAGGCCATGGTGGACAACCAGCAGGGACGGTTTGGATTGGCATTG
CTTATAAAGAAGAAGTGCACACATACGAACTTCATTTAGCGGGAATGCGTAACACGAATCGAATCCGTGCAGTGAAATTT
GCGATCCACTATATTCTGCGTATAATTATGAACGAAAACAGGTCAAATATTTAG

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.659

98.321

0.528
  cinA Streptococcus mitis SK321

42.553

100

0.432
  cinA Streptococcus mutans UA159

43.269

99.76

0.432
  cinA Streptococcus mitis NCTC 12261

42.317

100

0.429
  cinA Streptococcus pneumoniae TIGR4

41.608

100

0.422
  cinA Streptococcus pneumoniae Rx1

41.608

100

0.422
  cinA Streptococcus pneumoniae R6

41.608

100

0.422
  cinA Streptococcus pneumoniae D39

41.371

100

0.42
  cinA Streptococcus suis isolate S10

39.031

94.005

0.367

Multiple sequence alignment