Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACF3MZ_RS11300 Genome accession   NZ_CP171108
Coordinates   2481707..2482768 (-) Length   353 a.a.
NCBI ID   WP_394051258.1    Uniprot ID   -
Organism   Cohnella sp. WGS1546     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2476707..2487768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3MZ_RS11280 (ACF3MZ_11280) spoVS 2477340..2477600 (-) 261 WP_027084382.1 stage V sporulation protein SpoVS -
  ACF3MZ_RS11285 (ACF3MZ_11285) - 2477755..2478549 (-) 795 WP_394051254.1 TIGR00282 family metallophosphoesterase -
  ACF3MZ_RS11290 (ACF3MZ_11290) rny 2478680..2480221 (-) 1542 WP_394053283.1 ribonuclease Y -
  ACF3MZ_RS11295 (ACF3MZ_11295) - 2480484..2481635 (-) 1152 WP_394051256.1 regulatory protein RecX -
  ACF3MZ_RS11300 (ACF3MZ_11300) recA 2481707..2482768 (-) 1062 WP_394051258.1 recombinase RecA Machinery gene
  ACF3MZ_RS11305 (ACF3MZ_11305) map 2483758..2484504 (-) 747 WP_394051260.1 type I methionyl aminopeptidase -
  ACF3MZ_RS11310 (ACF3MZ_11310) - 2484532..2485290 (-) 759 WP_394051262.1 TetR/AcrR family transcriptional regulator -
  ACF3MZ_RS11315 (ACF3MZ_11315) cinA 2485873..2487126 (-) 1254 WP_394051264.1 competence/damage-inducible protein A Machinery gene
  ACF3MZ_RS11320 (ACF3MZ_11320) pgsA 2487173..2487751 (-) 579 WP_394051266.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37888.98 Da        Isoelectric Point: 4.8212

>NTDB_id=1060070 ACF3MZ_RS11300 WP_394051258.1 2481707..2482768(-) (recA) [Cohnella sp. WGS1546]
MSDRRAALDMALRQIEKQFGKGSVMKLGESAQRAVETVSSGVLALDIALGIGGYPRGRIIEVYGPESSGKTTVSLHAIAE
VQRSGGTAAFIDAEHALDPIYAKKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGDMGDS
FVGLQARLMSQAMRKLSGAISKSKCLAIFINQLREKVGVMFGNPEVTPGGRALKFYASVRLDVRRVEAIKQGNDVVGNRT
KIKVVKNKVAPPFKQAEVDIMYGEGISKVGSIVDIGTEQDIIQKSGAWFSYNNERLGQGRENAKQYLKDNPDISDKIEKQ
IREALLASSLASGQAGSFSSDDDEDDAEFGEED

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1060070 ACF3MZ_RS11300 WP_394051258.1 2481707..2482768(-) (recA) [Cohnella sp. WGS1546]
TTGTCGGATCGTCGCGCCGCATTAGACATGGCACTGCGCCAGATTGAAAAGCAATTCGGCAAAGGTTCGGTAATGAAATT
GGGAGAGAGCGCTCAGCGTGCCGTGGAGACGGTGTCCAGCGGCGTGCTGGCGTTGGATATCGCGCTCGGGATCGGCGGTT
ACCCGCGCGGGCGGATTATCGAAGTCTACGGGCCGGAATCTTCGGGTAAGACGACGGTTTCCCTTCATGCGATAGCGGAA
GTGCAGCGCTCGGGCGGCACGGCGGCGTTTATCGACGCGGAACACGCACTGGATCCGATTTACGCCAAGAAGCTCGGCGT
GAACATCGACGAATTGCTGCTGTCCCAGCCGGATACGGGCGAGCAGGCGCTCGAAATCGCGGAAGCGCTCGTGCGCAGCG
GCGCGGTCGACATCATCGTCGTGGACTCGGTGGCCGCGCTCGTGCCGAAGGCGGAAATCGAAGGGGATATGGGAGATTCC
TTCGTCGGCCTGCAGGCTCGGCTGATGTCGCAAGCGATGCGGAAGCTGTCCGGGGCGATCAGCAAGTCGAAGTGTCTGGC
GATTTTCATCAACCAGCTGCGCGAGAAGGTCGGCGTCATGTTCGGCAATCCGGAGGTCACTCCGGGCGGACGAGCCTTGA
AGTTCTACGCCAGCGTGCGCCTGGACGTTCGCCGCGTGGAGGCGATCAAGCAGGGAAACGACGTCGTCGGCAACCGGACG
AAGATCAAGGTCGTGAAGAACAAAGTCGCTCCCCCGTTCAAGCAAGCGGAAGTGGACATCATGTACGGGGAAGGGATTTC
CAAGGTCGGCAGCATCGTGGACATCGGTACGGAGCAAGACATTATTCAGAAGAGCGGCGCATGGTTCTCGTACAATAACG
AACGATTGGGACAGGGGCGCGAGAACGCCAAGCAATATTTGAAAGACAATCCGGACATTTCCGACAAAATCGAAAAACAA
ATCCGCGAAGCGCTGCTGGCGTCGTCTCTGGCTTCCGGTCAAGCAGGTTCGTTCTCCTCGGACGACGATGAGGACGACGC
GGAGTTTGGCGAAGAAGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.972

91.501

0.759
  recA Latilactobacillus sakei subsp. sakei 23K

72.981

91.218

0.666
  recA Streptococcus pyogenes NZ131

71.605

91.785

0.657
  recA Streptococcus mitis NCTC 12261

70.769

92.068

0.652
  recA Streptococcus pneumoniae D39

70.462

92.068

0.649
  recA Streptococcus pneumoniae TIGR4

70.462

92.068

0.649
  recA Streptococcus pneumoniae Rx1

70.462

92.068

0.649
  recA Streptococcus pneumoniae R6

70.462

92.068

0.649
  recA Streptococcus mitis SK321

70.154

92.068

0.646
  recA Streptococcus mutans UA159

69.753

91.785

0.64
  recA Lactococcus lactis subsp. cremoris KW2

69.113

92.635

0.64
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.793

98.584

0.629
  recA Vibrio cholerae strain A1552

63.793

98.584

0.629
  recA Glaesserella parasuis strain SC1401

62

99.15

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.257

93.768

0.612
  recA Acinetobacter baylyi ADP1

62.248

98.3

0.612
  recA Acinetobacter baumannii D1279779

62.682

97.167

0.609
  recA Pseudomonas stutzeri DSM 10701

64.526

92.635

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.933

97.167

0.592
  recA Ralstonia pseudosolanacearum GMI1000

65.916

88.102

0.581
  recA Neisseria gonorrhoeae strain FA1090

65.484

87.819

0.575
  recA Neisseria gonorrhoeae MS11

65.484

87.819

0.575
  recA Neisseria gonorrhoeae MS11

65.484

87.819

0.575
  recA Helicobacter pylori strain NCTC11637

61.42

91.785

0.564
  recA Helicobacter pylori 26695

61.111

91.785

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

92.635

0.561

Multiple sequence alignment