Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACF3MZ_RS11315 Genome accession   NZ_CP171108
Coordinates   2485873..2487126 (-) Length   417 a.a.
NCBI ID   WP_394051264.1    Uniprot ID   -
Organism   Cohnella sp. WGS1546     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2480873..2492126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3MZ_RS11300 (ACF3MZ_11300) recA 2481707..2482768 (-) 1062 WP_394051258.1 recombinase RecA Machinery gene
  ACF3MZ_RS11305 (ACF3MZ_11305) map 2483758..2484504 (-) 747 WP_394051260.1 type I methionyl aminopeptidase -
  ACF3MZ_RS11310 (ACF3MZ_11310) - 2484532..2485290 (-) 759 WP_394051262.1 TetR/AcrR family transcriptional regulator -
  ACF3MZ_RS11315 (ACF3MZ_11315) cinA 2485873..2487126 (-) 1254 WP_394051264.1 competence/damage-inducible protein A Machinery gene
  ACF3MZ_RS11320 (ACF3MZ_11320) pgsA 2487173..2487751 (-) 579 WP_394051266.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACF3MZ_RS11325 (ACF3MZ_11325) rimO 2487748..2489076 (-) 1329 WP_394051268.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ACF3MZ_RS11330 (ACF3MZ_11330) - 2489162..2489653 (-) 492 WP_394051270.1 YajQ family cyclic di-GMP-binding protein -
  ACF3MZ_RS11335 (ACF3MZ_11335) - 2489760..2490617 (-) 858 WP_394051272.1 helix-turn-helix domain-containing protein -
  ACF3MZ_RS11340 (ACF3MZ_11340) - 2490666..2491436 (-) 771 WP_394051274.1 DUF3388 domain-containing protein -
  ACF3MZ_RS11345 (ACF3MZ_11345) - 2491625..2491879 (-) 255 WP_394051276.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 44434.11 Da        Isoelectric Point: 5.9292

>NTDB_id=1060071 ACF3MZ_RS11315 WP_394051264.1 2485873..2487126(-) (cinA) [Cohnella sp. WGS1546]
MRAEIIAVGTELLLGQIVNTNAQYLSRGLAELGIDVYYQTVVGDNKERLIRAIEIAKGRADLLVFTGGLGPTLDDLTRDA
LAEYLGRGIELHGPSMAKIEKLFADRGSALIESNRRQALLVEGATPLRNDTGLAVGNALAAGGTLYLLLPGPPREMKPMF
DNDAKTWLKERLGSSNALHSVMLKFAGIGESMLEDKLIDLIREQRDPTIAPYANEGEVTVRVSTKAANGEEAARKLAGTL
AEIRRRMSAYLYAEEDVPIEAAVVRLLSRQQRTLALAESCTGGMAAALVTTIPGSAVVFRGGIVSYSNEMKMSQLGVPRE
LLEGPGAPGAISAETAIAMAEGARKAADADFALSVTGNAGPAAAEDKPVGLVYIGLAERGKECRVEKLQLSGDREGIRLR
ATKRALYLLWLSLAGHG

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=1060071 ACF3MZ_RS11315 WP_394051264.1 2485873..2487126(-) (cinA) [Cohnella sp. WGS1546]
ATGAGAGCAGAGATTATCGCCGTCGGCACGGAGCTGCTCCTCGGTCAAATCGTGAACACGAACGCCCAGTATCTGTCGCG
CGGTTTGGCGGAGCTGGGCATTGACGTTTATTATCAGACCGTCGTGGGAGACAATAAGGAGCGTTTGATCCGGGCGATCG
AGATCGCGAAGGGAAGAGCCGACCTGCTCGTGTTCACGGGCGGTCTCGGCCCTACGCTCGACGATCTGACGCGGGACGCG
CTGGCCGAATATTTGGGCCGGGGCATCGAGCTTCACGGGCCGTCGATGGCCAAGATCGAGAAGCTGTTCGCGGACCGCGG
CAGCGCGCTCATCGAGAGCAATCGCCGTCAGGCGCTGCTCGTCGAAGGGGCGACGCCGCTGCGCAACGATACGGGGCTGG
CCGTCGGCAACGCGCTGGCGGCGGGCGGCACGCTCTACTTGCTGCTGCCGGGTCCGCCGCGAGAGATGAAGCCGATGTTC
GACAATGATGCGAAGACATGGCTGAAGGAGCGGCTCGGCTCGTCGAACGCGCTGCATTCGGTCATGCTGAAGTTCGCGGG
CATCGGGGAGTCGATGCTGGAAGACAAGCTGATCGATCTCATTCGCGAGCAGCGGGATCCGACGATCGCTCCGTACGCGA
ACGAAGGCGAGGTGACCGTTCGCGTGTCCACGAAAGCCGCGAACGGGGAAGAGGCGGCCCGCAAGCTGGCCGGCACGTTG
GCGGAAATTCGCCGCCGCATGTCCGCTTATCTGTACGCCGAGGAAGACGTGCCGATCGAGGCGGCCGTCGTGCGGCTGCT
GTCGCGTCAGCAGCGCACGCTGGCGCTGGCGGAGAGCTGCACGGGAGGCATGGCTGCGGCGCTGGTGACGACGATTCCGG
GCAGCGCGGTCGTGTTTCGCGGCGGCATCGTCTCGTACAGCAACGAAATGAAGATGAGCCAGCTCGGCGTCCCTCGGGAG
CTGCTGGAAGGGCCGGGCGCGCCGGGGGCGATCAGCGCGGAAACGGCGATCGCGATGGCGGAAGGCGCGCGCAAGGCGGC
AGATGCCGACTTCGCGCTGTCGGTGACCGGCAATGCCGGGCCGGCCGCGGCGGAAGACAAGCCGGTCGGGCTCGTCTACA
TCGGCCTGGCGGAGCGGGGCAAGGAGTGTCGGGTCGAGAAGCTGCAGCTGAGCGGCGACCGCGAAGGCATCCGGCTGCGC
GCGACAAAGCGGGCTCTCTATCTGCTATGGTTGTCGCTGGCGGGACACGGGTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-162)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

47.294

100

0.482
  cinA Streptococcus pneumoniae R6

46.824

100

0.477
  cinA Streptococcus pneumoniae TIGR4

46.824

100

0.477
  cinA Streptococcus pneumoniae Rx1

46.824

100

0.477
  cinA Streptococcus pneumoniae D39

46.588

100

0.475
  cinA Streptococcus mitis SK321

45.991

100

0.468
  cinA Streptococcus mutans UA159

44.286

100

0.446
  cinA Bacillus subtilis subsp. subtilis str. 168

43.382

97.842

0.424
  cinA Streptococcus suis isolate S10

41.995

91.367

0.384

Multiple sequence alignment