Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACF3NK_RS11515 Genome accession   NZ_CP171104
Coordinates   2487005..2488141 (-) Length   378 a.a.
NCBI ID   WP_008710861.1    Uniprot ID   A0AAW5K6Y5
Organism   Cloacibacillus evryensis strain WGS1925     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2482005..2493141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3NK_RS11515 (ACF3NK_11515) recA 2487005..2488141 (-) 1137 WP_008710861.1 recombinase RecA Machinery gene
  ACF3NK_RS11520 (ACF3NK_11520) thpR 2488197..2488784 (-) 588 WP_308202658.1 RNA 2',3'-cyclic phosphodiesterase -
  ACF3NK_RS11525 (ACF3NK_11525) - 2488796..2489308 (-) 513 WP_034442111.1 CinA family protein -
  ACF3NK_RS11530 (ACF3NK_11530) - 2489305..2489793 (-) 489 WP_008710855.1 phosphatidylglycerophosphatase A -
  ACF3NK_RS11535 (ACF3NK_11535) rimO 2489790..2491079 (-) 1290 WP_008710852.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ACF3NK_RS11540 (ACF3NK_11540) - 2491076..2492071 (-) 996 WP_008710849.1 asparaginase domain-containing protein -
  ACF3NK_RS11545 (ACF3NK_11545) - 2492223..2492867 (+) 645 WP_008710848.1 DedA family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40471.13 Da        Isoelectric Point: 4.8110

>NTDB_id=1060044 ACF3NK_RS11515 WP_008710861.1 2487005..2488141(-) (recA) [Cloacibacillus evryensis strain WGS1925]
MAKKAVTKEDILAQALGEIRGKFGDGSIMRLGDEVQHAVEVIPSGILPLDVALGIGGVPRGRVVEIFGPEGGGKTTIALH
ILAEAQKAGGIAAFIDAEHALDPRLAAALGVDTANLYLSQPDSGEQAFYILDTLVRSGALDLVVVDSVAALTPQAEIDGK
MGEGSNQVGLHARLMSYALRRLTSAIAKSKTTVIFINQLRAQISSGYSQGPTETTTGGRALKFYSSVRIEVRRGKQVSQG
DVAIGHELYIKVVKNKQAPPFRTAHTTLIYGKGVPKGMAVLDMALDREVMKRKGSWIAYKGESIGQGKDTVASYIEEHPE
LMDEITKEVLRKVAEGLGLIDEPEHEEPEDSALDDNVEALLEEGVLKLDITEEPEEGE

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=1060044 ACF3NK_RS11515 WP_008710861.1 2487005..2488141(-) (recA) [Cloacibacillus evryensis strain WGS1925]
ATGGCAAAAAAGGCGGTAACCAAAGAAGACATATTGGCGCAGGCCCTTGGTGAGATAAGGGGAAAATTCGGCGACGGCTC
CATCATGCGTCTCGGAGACGAAGTGCAGCACGCGGTTGAGGTCATCCCAAGCGGAATCCTTCCTCTTGACGTCGCTCTCG
GCATCGGCGGCGTCCCGCGCGGACGCGTCGTTGAAATATTCGGCCCTGAGGGCGGCGGAAAAACCACCATAGCCCTTCAC
ATACTCGCCGAGGCGCAGAAAGCCGGCGGTATCGCCGCCTTCATAGACGCCGAGCATGCGCTGGACCCGCGTCTGGCGGC
GGCGCTCGGCGTGGACACCGCGAACCTTTACCTGTCGCAGCCCGACAGCGGCGAACAGGCTTTTTATATACTGGATACCC
TGGTCCGCAGCGGCGCGCTTGACCTCGTCGTTGTAGACTCGGTGGCCGCGCTTACGCCGCAGGCCGAGATAGACGGGAAA
ATGGGAGAGGGCAGCAATCAGGTCGGGCTTCACGCGCGCCTCATGAGCTACGCGCTGCGCCGCCTCACATCAGCCATCGC
GAAGAGCAAGACGACGGTTATCTTCATCAACCAGCTGCGGGCGCAGATAAGCTCGGGCTACAGTCAGGGGCCGACGGAGA
CCACGACCGGCGGGCGCGCGCTGAAATTCTACAGTTCGGTCAGAATAGAGGTACGGCGCGGCAAGCAGGTCTCTCAGGGA
GACGTCGCCATTGGTCATGAGCTCTACATAAAAGTGGTTAAAAATAAACAGGCGCCGCCGTTTAGAACGGCACACACCAC
GCTGATCTACGGCAAGGGCGTTCCCAAGGGGATGGCGGTGCTCGACATGGCGCTCGACCGGGAAGTCATGAAACGCAAAG
GCTCATGGATCGCTTACAAAGGCGAGAGCATCGGGCAGGGCAAAGATACCGTCGCATCTTATATAGAAGAACATCCCGAA
CTTATGGACGAAATTACAAAAGAAGTCCTGCGTAAGGTGGCCGAGGGGCTGGGGCTGATAGACGAGCCTGAACACGAAGA
GCCTGAAGATTCAGCGCTTGATGACAACGTTGAGGCGCTTCTTGAAGAGGGCGTCCTCAAACTCGATATAACAGAAGAGC
CTGAAGAGGGCGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae R6

52.533

99.206

0.521
  recA Streptococcus pneumoniae TIGR4

52.533

99.206

0.521
  recA Streptococcus pneumoniae Rx1

52.533

99.206

0.521
  recA Streptococcus pneumoniae D39

52.533

99.206

0.521
  recA Streptococcus mitis NCTC 12261

52.011

98.677

0.513
  recA Streptococcus mitis SK321

51.604

98.942

0.511
  recA Streptococcus mutans UA159

51.762

97.619

0.505
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

53.779

91.005

0.489
  recA Acinetobacter baylyi ADP1

53.314

91.799

0.489
  recA Streptococcus pyogenes NZ131

52.326

91.005

0.476
  recA Acinetobacter baumannii D1279779

51.003

92.328

0.471
  recA Lactococcus lactis subsp. cremoris KW2

51.156

91.534

0.468
  recA Helicobacter pylori 26695

51.312

90.741

0.466
  recA Helicobacter pylori strain NCTC11637

51.312

90.741

0.466
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.867

91.534

0.466
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.18

85.45

0.463
  recA Latilactobacillus sakei subsp. sakei 23K

51.929

89.153

0.463
  recA Vibrio cholerae strain A1552

49.153

93.651

0.46
  recA Vibrio cholerae O1 biovar El Tor strain E7946

49.153

93.651

0.46
  recA Bacillus subtilis subsp. subtilis str. 168

54.403

84.127

0.458
  recA Neisseria gonorrhoeae MS11

50.882

89.947

0.458
  recA Neisseria gonorrhoeae MS11

50.882

89.947

0.458
  recA Neisseria gonorrhoeae strain FA1090

50.882

89.947

0.458
  recA Pseudomonas stutzeri DSM 10701

51.988

86.508

0.45
  recA Ralstonia pseudosolanacearum GMI1000

52.648

84.921

0.447
  recA Glaesserella parasuis strain SC1401

51.376

86.508

0.444

Multiple sequence alignment