Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O1Q83_RS10530 Genome accession   NZ_CP170642
Coordinates   2135203..2136327 (-) Length   374 a.a.
NCBI ID   WP_132299437.1    Uniprot ID   A0A4R1L240
Organism   Lonepinella koalarum strain ACM3666     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2130203..2141327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q83_RS10500 (O1Q83_02066) - 2130519..2130770 (-) 252 WP_132299432.1 hypothetical protein -
  O1Q83_RS10505 (O1Q83_02067) - 2130824..2131159 (-) 336 WP_132299433.1 hypothetical protein -
  O1Q83_RS10510 (O1Q83_02068) selB 2131210..2133066 (-) 1857 WP_132299434.1 selenocysteine-specific translation elongation factor -
  O1Q83_RS10515 (O1Q83_02069) selA 2133063..2134445 (-) 1383 WP_132299435.1 L-seryl-tRNA(Sec) selenium transferase -
  O1Q83_RS10525 (O1Q83_02071) recX 2134678..2135130 (-) 453 WP_132299436.1 recombination regulator RecX -
  O1Q83_RS10530 (O1Q83_02072) recA 2135203..2136327 (-) 1125 WP_132299437.1 recombinase RecA Machinery gene
  O1Q83_RS10535 (O1Q83_02073) - 2136397..2137038 (-) 642 WP_228777414.1 anthranilate synthase component II -
  O1Q83_RS10540 (O1Q83_02074) - 2137093..2138076 (+) 984 WP_132299438.1 aminodeoxychorismate synthase component I -
  O1Q83_RS10545 (O1Q83_02075) - 2138073..2138657 (+) 585 WP_165867188.1 aminotransferase class IV family protein -
  O1Q83_RS10550 (O1Q83_02076) pdxH 2138678..2139310 (+) 633 WP_132299439.1 pyridoxamine 5'-phosphate oxidase -
  O1Q83_RS10555 (O1Q83_02077) dprA 2139543..2140649 (-) 1107 WP_132299440.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 39992.74 Da        Isoelectric Point: 5.0833

>NTDB_id=1058296 O1Q83_RS10530 WP_132299437.1 2135203..2136327(-) (recA) [Lonepinella koalarum strain ACM3666]
MAKDNKAKAKPTAKENNSQEDKAKALAAALGQIEKQFGKGAIMKLGDSQTLDVESISTGSIGLDVALGIGGLPMGRIVEI
FGPESSGKTTLTLSVIAQAQKAGKVCAFIDAEHALDPIYAAKLGVDVKELFISQPDNGEQALEICDALVRSGAIDVIIVD
SVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGQIKNSNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLD
IRRIGAVKEGDKIIGNDTRVKVVKNKLAAPFRQAEFQILYGAGISKNGELIELGVKQKLVNKSGAWYAYNGEKIGQGKAN
AIKWLEANPEATAELEDKIKKALLENPEQALLPADDSDKDQSDEINDEVNDIDF

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=1058296 O1Q83_RS10530 WP_132299437.1 2135203..2136327(-) (recA) [Lonepinella koalarum strain ACM3666]
ATGGCTAAAGATAACAAAGCGAAAGCAAAACCAACCGCAAAAGAAAATAACTCACAAGAAGACAAAGCAAAAGCACTAGC
AGCCGCTCTCGGTCAAATTGAAAAACAATTCGGCAAAGGGGCGATTATGAAGTTAGGCGATTCACAAACCCTTGATGTAG
AATCTATTTCAACAGGTTCAATCGGTTTAGATGTAGCATTAGGTATTGGTGGTTTACCAATGGGACGTATTGTTGAAATC
TTTGGTCCAGAATCATCAGGTAAAACTACATTAACCCTTTCCGTGATCGCACAAGCACAAAAAGCAGGCAAAGTCTGTGC
CTTTATTGATGCAGAACACGCCTTAGACCCAATTTATGCAGCAAAATTAGGGGTTGATGTCAAAGAACTGTTTATTTCTC
AACCAGATAATGGTGAACAAGCGCTAGAAATCTGTGACGCTTTAGTGCGTTCAGGGGCGATTGATGTGATTATTGTGGAC
TCTGTCGCTGCATTAACCCCAAAAGCTGAAATCGAAGGAGATATGGGCGATTCTCACGTTGGTTTGCAAGCTCGTTTAAT
GTCACAAGCGTTACGTAAATTAACCGGTCAAATTAAAAACTCTAACTGTTTAGTGGTGTTTATCAACCAAATTCGGATGA
AAATCGGTGTGATGTTTGGTAACCCAGAAACCACCACTGGCGGTAACGCCCTAAAATTCTATTCATCTGTGCGTTTAGAT
ATTCGCCGTATCGGTGCAGTGAAAGAGGGTGATAAGATTATTGGGAATGATACGCGAGTTAAGGTAGTGAAAAATAAACT
TGCTGCGCCGTTCCGTCAAGCCGAATTCCAAATTCTTTATGGTGCGGGTATCTCAAAAAATGGTGAATTAATTGAACTTG
GTGTTAAACAAAAATTAGTCAACAAATCTGGGGCTTGGTATGCTTACAATGGTGAAAAAATCGGGCAAGGTAAAGCGAAT
GCGATTAAATGGTTAGAAGCCAATCCAGAAGCAACCGCAGAATTAGAAGATAAAATCAAAAAGGCATTATTAGAAAATCC
TGAACAAGCCTTGTTGCCAGCGGATGATAGTGATAAAGATCAAAGTGATGAAATCAATGACGAAGTCAATGATATAGATT
TCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R1L240

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

70.799

97.059

0.687
  recA Pseudomonas stutzeri DSM 10701

77.231

86.898

0.671
  recA Vibrio cholerae strain A1552

73.964

90.374

0.668
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.964

90.374

0.668
  recA Neisseria gonorrhoeae MS11

74.845

86.096

0.644
  recA Neisseria gonorrhoeae MS11

74.845

86.096

0.644
  recA Neisseria gonorrhoeae strain FA1090

74.845

86.096

0.644
  recA Acinetobacter baylyi ADP1

69.501

91.176

0.634
  recA Acinetobacter baumannii D1279779

68.529

90.909

0.623
  recA Ralstonia pseudosolanacearum GMI1000

68.902

87.701

0.604
  recA Helicobacter pylori strain NCTC11637

62.388

89.572

0.559
  recA Helicobacter pylori 26695

62.388

89.572

0.559
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.077

86.898

0.548
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.597

89.572

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.382

92.513

0.54
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

85.829

0.535
  recA Streptococcus mitis SK321

55.432

95.989

0.532
  recA Streptococcus mitis NCTC 12261

55.056

95.187

0.524
  recA Streptococcus mutans UA159

55.908

92.781

0.519
  recA Latilactobacillus sakei subsp. sakei 23K

56.012

91.176

0.511
  recA Lactococcus lactis subsp. cremoris KW2

53.09

95.187

0.505
  recA Streptococcus pneumoniae TIGR4

57.716

86.631

0.5
  recA Streptococcus pneumoniae D39

57.716

86.631

0.5
  recA Streptococcus pneumoniae Rx1

57.716

86.631

0.5
  recA Streptococcus pneumoniae R6

57.716

86.631

0.5
  recA Streptococcus pyogenes NZ131

57.231

86.898

0.497

Multiple sequence alignment