Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   O1Q83_RS10555 Genome accession   NZ_CP170642
Coordinates   2139543..2140649 (-) Length   368 a.a.
NCBI ID   WP_132299440.1    Uniprot ID   A0A4R1KZK4
Organism   Lonepinella koalarum strain ACM3666     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2134543..2145649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q83_RS10525 (O1Q83_02071) recX 2134678..2135130 (-) 453 WP_132299436.1 recombination regulator RecX -
  O1Q83_RS10530 (O1Q83_02072) recA 2135203..2136327 (-) 1125 WP_132299437.1 recombinase RecA Machinery gene
  O1Q83_RS10535 (O1Q83_02073) - 2136397..2137038 (-) 642 WP_228777414.1 anthranilate synthase component II -
  O1Q83_RS10540 (O1Q83_02074) - 2137093..2138076 (+) 984 WP_132299438.1 aminodeoxychorismate synthase component I -
  O1Q83_RS10545 (O1Q83_02075) - 2138073..2138657 (+) 585 WP_165867188.1 aminotransferase class IV family protein -
  O1Q83_RS10550 (O1Q83_02076) pdxH 2138678..2139310 (+) 633 WP_132299439.1 pyridoxamine 5'-phosphate oxidase -
  O1Q83_RS10555 (O1Q83_02077) dprA 2139543..2140649 (-) 1107 WP_132299440.1 DNA-processing protein DprA Machinery gene
  O1Q83_RS10560 (O1Q83_02078) - 2140821..2142323 (+) 1503 WP_132299441.1 helicase HerA-like C-terminal domain-containing protein -
  O1Q83_RS10565 (O1Q83_02079) - 2142380..2143606 (-) 1227 WP_132299443.1 sodium/glutamate symporter -
  O1Q83_RS10570 (O1Q83_02080) pckA 2143847..2145463 (-) 1617 WP_132299445.1 phosphoenolpyruvate carboxykinase (ATP) -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41324.14 Da        Isoelectric Point: 5.1965

>NTDB_id=1058297 O1Q83_RS10555 WP_132299440.1 2139543..2140649(-) (dprA) [Lonepinella koalarum strain ACM3666]
MQNIELLLRLMQVPNLGANAIQEILTQITPQTLLDYDETAFHHIGWQAKQIQRWFQPEQKYIEPALEWQQTDTNHHIVAY
YQAEYPQLLKQINSVPPLLFVKGNVENLNLAQLAIVGSRDCSNYGEYWAKYFATELIRSGFIVTSGLAIGIDGFAHKAVV
EMQSKTIAVLGSGLQQIYPSRHKGLAEQILVNNGTLVSEFLPNQPPVATNFPRRNRIISGMSQGVLVVEANQKSGSLITA
RYALEQNRDVFALPGNLHNQYSQGCHHLIKQGANLVESVQDIIENLAPYSLPMNGFAPNTTSQNTELPFNVIEPTYPDLY
ALIGYNPISIDELAEQSKISVDVLLGQLLTLELEELIECERGLYKRRL

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=1058297 O1Q83_RS10555 WP_132299440.1 2139543..2140649(-) (dprA) [Lonepinella koalarum strain ACM3666]
ATGCAAAATATCGAACTCTTATTACGTCTAATGCAAGTACCTAATCTTGGTGCAAATGCAATTCAAGAAATTTTAACTCA
AATCACACCACAAACCCTGTTAGATTACGATGAAACCGCTTTTCATCACATTGGTTGGCAAGCAAAACAAATTCAACGTT
GGTTTCAACCAGAGCAAAAATATATTGAACCAGCACTAGAATGGCAACAAACTGATACAAATCATCATATTGTGGCTTAC
TATCAAGCAGAATATCCGCAATTATTAAAGCAAATTAATTCCGTTCCGCCCTTGTTGTTTGTAAAAGGCAATGTGGAAAA
TCTAAATCTGGCTCAACTGGCGATTGTAGGTAGTCGGGATTGCTCTAATTACGGTGAATATTGGGCTAAATATTTTGCCA
CAGAATTGATTCGATCAGGATTTATTGTTACCAGTGGATTAGCGATTGGAATTGACGGTTTCGCACACAAAGCAGTAGTT
GAAATGCAAAGCAAAACGATTGCTGTATTAGGCAGTGGATTACAACAAATTTATCCCAGTCGGCATAAAGGATTAGCGGA
ACAAATTCTAGTGAATAATGGCACGTTGGTATCAGAATTTTTACCCAACCAACCGCCTGTTGCCACTAATTTCCCAAGAC
GAAACCGCATTATTAGTGGCATGTCGCAAGGCGTGTTGGTGGTTGAAGCGAATCAAAAAAGCGGATCATTGATTACCGCC
CGTTATGCCCTAGAGCAAAATCGAGATGTATTTGCCTTACCTGGTAATTTGCATAATCAATATAGCCAAGGCTGCCATCA
TCTGATTAAACAAGGGGCAAATTTAGTGGAATCGGTGCAGGATATTATTGAAAATCTCGCTCCTTATTCGTTACCCATGA
ATGGCTTTGCTCCCAACACGACTAGTCAAAATACAGAGTTACCTTTTAATGTTATTGAGCCAACATATCCTGATTTATAT
GCTTTAATCGGCTATAACCCCATTAGTATTGATGAACTGGCGGAACAGTCCAAAATTTCAGTTGATGTCCTGTTAGGGCA
ATTATTGACGCTAGAATTAGAAGAACTCATTGAATGTGAAAGGGGGCTATATAAACGACGATTATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-277)

DprA winged helix domain (DprA_WH)

(316-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R1KZK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Haemophilus influenzae Rd KW20

61.413

100

0.614
  dprA Glaesserella parasuis strain SC1401

50.67

100

0.514
  dprA Vibrio campbellii strain DS40M4

44.077

98.641

0.435
  dprA Vibrio cholerae strain A1552

44.886

95.652

0.429
  dprA Legionella pneumophila strain ERS1305867

39.785

100

0.402
  dprA Acinetobacter baylyi ADP1

39.193

94.293

0.37

Multiple sequence alignment