Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O1Q79_RS09030 Genome accession   NZ_CP170386
Coordinates   1869574..1870698 (+) Length   374 a.a.
NCBI ID   WP_386691867.1    Uniprot ID   -
Organism   Lonepinella sp. MS14434     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1864574..1875698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q79_RS09005 (O1Q79_01802) dprA 1865241..1866347 (+) 1107 WP_386691859.1 DNA-processing protein DprA Machinery gene
  O1Q79_RS09010 (O1Q79_01803) pdxH 1866580..1867212 (-) 633 WP_386691861.1 pyridoxamine 5'-phosphate oxidase -
  O1Q79_RS09015 (O1Q79_01804) - 1867228..1867809 (-) 582 WP_386693385.1 aminotransferase class IV family protein -
  O1Q79_RS09020 (O1Q79_01805) - 1867809..1868792 (-) 984 WP_386691863.1 aminodeoxychorismate synthase component I -
  O1Q79_RS09025 (O1Q79_01806) - 1868863..1869504 (+) 642 WP_386691865.1 anthranilate synthase component II -
  O1Q79_RS09030 (O1Q79_01807) recA 1869574..1870698 (+) 1125 WP_386691867.1 recombinase RecA Machinery gene
  O1Q79_RS09035 (O1Q79_01808) recX 1870771..1871229 (+) 459 WP_386691869.1 recombination regulator RecX -
  O1Q79_RS09045 (O1Q79_01810) - 1871485..1871808 (+) 324 WP_386688812.1 helix-turn-helix domain-containing protein -
  O1Q79_RS09050 (O1Q79_01811) - 1871808..1873085 (+) 1278 WP_386691871.1 type II toxin-antitoxin system HipA family toxin -
  O1Q79_RS09055 (O1Q79_01812) selA 1873129..1874511 (+) 1383 WP_386691873.1 L-seryl-tRNA(Sec) selenium transferase -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40007.62 Da        Isoelectric Point: 4.7693

>NTDB_id=1056528 O1Q79_RS09030 WP_386691867.1 1869574..1870698(+) (recA) [Lonepinella sp. MS14434]
MAKDNKAKAKPTAKENNSQEDKAKALAAALGQIEKQFGKGAIMKLGDSQTLDVESISTGSIGLDVALGIGGLPMGRIVEI
FGPESSGKTTLTLSVIAQAQKAGKVCAFIDAEHALDPIYAAKLGVDVKELFISQPDNGEQALEICDALVRSGAIDVIIVD
SVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGQIKNSNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLD
IRRIGAVKEGDEIIGNDTRVKVVKNKLAAPFRQAEFQILYGAGISKNGELIELGVKQKLVNKSGAWYAYNGEKIGQGKAN
AIKWLEDNPEAAAELEDKIKTALLENPEQALLPADDNDKDQSDEINDEVNDLDF

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=1056528 O1Q79_RS09030 WP_386691867.1 1869574..1870698(+) (recA) [Lonepinella sp. MS14434]
ATGGCTAAAGATAACAAAGCGAAAGCAAAACCAACCGCAAAAGAAAATAACTCACAAGAAGACAAAGCAAAAGCACTGGC
AGCCGCTCTTGGTCAAATTGAAAAACAATTTGGCAAAGGGGCGATTATGAAGTTAGGCGATTCACAAACCCTTGATGTAG
AATCTATTTCAACAGGTTCAATCGGTTTAGATGTAGCATTAGGTATTGGTGGTTTGCCAATGGGACGTATTGTTGAAATC
TTTGGTCCAGAATCATCAGGTAAAACTACATTAACCCTTTCCGTGATCGCACAAGCACAAAAAGCAGGCAAAGTCTGTGC
CTTTATTGATGCGGAACATGCCTTAGACCCAATTTATGCAGCAAAATTAGGGGTTGATGTCAAAGAACTGTTTATTTCTC
AACCTGATAATGGTGAACAGGCGCTAGAAATCTGTGATGCCTTAGTACGTTCAGGGGCGATTGATGTGATTATTGTGGAC
TCTGTCGCTGCATTAACCCCAAAAGCTGAAATCGAAGGGGATATGGGCGATTCTCACGTTGGTTTACAAGCCCGTTTAAT
GTCACAAGCGTTGCGTAAATTAACTGGTCAGATTAAAAACTCTAACTGTTTAGTAGTATTTATCAACCAAATTCGAATGA
AAATCGGTGTGATGTTTGGCAATCCTGAAACCACCACTGGCGGTAACGCCCTAAAATTCTATTCATCTGTGCGTTTAGAT
ATTCGCCGTATCGGTGCAGTGAAAGAGGGTGATGAGATTATTGGTAATGATACTCGGGTCAAAGTAGTGAAAAATAAACT
TGCAGCTCCGTTCCGTCAAGCCGAATTCCAAATTCTTTATGGTGCGGGTATCTCGAAAAATGGTGAGCTAATTGAACTTG
GTGTTAAACAAAAATTAGTCAACAAATCTGGGGCTTGGTATGCTTACAATGGCGAGAAGATCGGGCAAGGTAAAGCGAAT
GCGATCAAATGGTTAGAAGACAATCCTGAAGCAGCCGCAGAATTAGAAGATAAAATTAAGACTGCTTTATTAGAAAATCC
AGAACAAGCCTTGTTGCCAGCTGATGATAACGATAAAGATCAAAGTGATGAAATCAATGACGAAGTAAATGATTTAGATT
TCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

70.541

98.93

0.698
  recA Pseudomonas stutzeri DSM 10701

77.538

86.898

0.674
  recA Vibrio cholerae strain A1552

74.702

89.84

0.671
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.702

89.84

0.671
  recA Neisseria gonorrhoeae MS11

75.155

86.096

0.647
  recA Neisseria gonorrhoeae MS11

75.155

86.096

0.647
  recA Neisseria gonorrhoeae strain FA1090

75.155

86.096

0.647
  recA Acinetobacter baylyi ADP1

69.795

91.176

0.636
  recA Acinetobacter baumannii D1279779

72

86.898

0.626
  recA Ralstonia pseudosolanacearum GMI1000

69.512

87.701

0.61
  recA Helicobacter pylori 26695

62.687

89.572

0.562
  recA Helicobacter pylori strain NCTC11637

62.687

89.572

0.562
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.692

86.898

0.553
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.493

89.572

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.382

92.513

0.54
  recA Bacillus subtilis subsp. subtilis str. 168

62.5

85.561

0.535
  recA Streptococcus mitis SK321

55.337

95.187

0.527
  recA Streptococcus pneumoniae Rx1

54.622

95.455

0.521
  recA Streptococcus pneumoniae TIGR4

54.622

95.455

0.521
  recA Streptococcus pneumoniae R6

54.622

95.455

0.521
  recA Streptococcus pneumoniae D39

54.622

95.455

0.521
  recA Streptococcus mutans UA159

56.196

92.781

0.521
  recA Streptococcus mitis NCTC 12261

54.52

94.652

0.516
  recA Latilactobacillus sakei subsp. sakei 23K

56.305

91.176

0.513
  recA Lactococcus lactis subsp. cremoris KW2

53.09

95.187

0.505
  recA Streptococcus pyogenes NZ131

57.362

87.166

0.5

Multiple sequence alignment