Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   O1Q79_RS09005 Genome accession   NZ_CP170386
Coordinates   1865241..1866347 (+) Length   368 a.a.
NCBI ID   WP_386691859.1    Uniprot ID   -
Organism   Lonepinella sp. MS14434     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1860241..1871347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q79_RS08990 (O1Q79_01799) glmU 1860242..1861606 (+) 1365 WP_386691853.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  O1Q79_RS08995 (O1Q79_01800) pckA 1861835..1863451 (+) 1617 WP_386691855.1 phosphoenolpyruvate carboxykinase (ATP) -
  O1Q79_RS09000 (O1Q79_01801) - 1863567..1865069 (-) 1503 WP_386691857.1 helicase HerA-like C-terminal domain-containing protein -
  O1Q79_RS09005 (O1Q79_01802) dprA 1865241..1866347 (+) 1107 WP_386691859.1 DNA-processing protein DprA Machinery gene
  O1Q79_RS09010 (O1Q79_01803) pdxH 1866580..1867212 (-) 633 WP_386691861.1 pyridoxamine 5'-phosphate oxidase -
  O1Q79_RS09015 (O1Q79_01804) - 1867228..1867809 (-) 582 WP_386693385.1 aminotransferase class IV family protein -
  O1Q79_RS09020 (O1Q79_01805) - 1867809..1868792 (-) 984 WP_386691863.1 aminodeoxychorismate synthase component I -
  O1Q79_RS09025 (O1Q79_01806) - 1868863..1869504 (+) 642 WP_386691865.1 anthranilate synthase component II -
  O1Q79_RS09030 (O1Q79_01807) recA 1869574..1870698 (+) 1125 WP_386691867.1 recombinase RecA Machinery gene
  O1Q79_RS09035 (O1Q79_01808) recX 1870771..1871229 (+) 459 WP_386691869.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41329.16 Da        Isoelectric Point: 5.3640

>NTDB_id=1056527 O1Q79_RS09005 WP_386691859.1 1865241..1866347(+) (dprA) [Lonepinella sp. MS14434]
MQNIELLLRLMQVPNLGANAIQEILTQITPQTLLDYDETAFHHIGWQAKQIQRWFHPEQKYIEPPLEWQQADTNHHIVAY
YQAEYPQLLKQINSVPPLLFVKGNVENLNLAQLAIVGSRDCSNYGEYWAKYFATELIRSGFIVTSGLAIGIDGFAHKAVV
EMQSKTIAVLGSGLQQIYPSRHKGLAEQILVNNGTLVSEFLPNQPPVATNFPRRNRIISGMSQGVLVVEANQKSGSLITA
RYALEQNRDVFALPGNLHNQYSQGCHHLIKQGANLVESVQDIIENLAPYSLPMNGFAPNTTSQNTELPFNVIEPTYPDLY
ALIGYNPISIDELAEQSKISVDVLLGQLLTLELEELIECERGLYKRRL

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=1056527 O1Q79_RS09005 WP_386691859.1 1865241..1866347(+) (dprA) [Lonepinella sp. MS14434]
ATGCAAAATATCGAACTCTTATTACGTCTAATGCAAGTACCTAATCTTGGTGCAAATGCAATTCAAGAAATTTTAACTCA
AATCACACCACAAACCCTGTTAGATTACGATGAAACCGCTTTTCATCACATTGGCTGGCAAGCAAAACAAATTCAACGTT
GGTTTCACCCAGAACAAAAATATATTGAACCACCACTGGAATGGCAACAAGCTGATACAAATCATCATATTGTGGCTTAC
TATCAAGCAGAATATCCGCAATTATTAAAGCAAATTAATTCCGTTCCGCCGTTGTTGTTTGTAAAAGGCAATGTGGAAAA
TCTAAATCTGGCTCAACTGGCGATTGTAGGTAGTCGGGATTGCTCTAATTACGGTGAATATTGGGCTAAATATTTTGCCA
CAGAATTGATTCGATCAGGATTTATTGTTACCAGTGGATTAGCGATTGGAATTGACGGTTTCGCACACAAAGCAGTGGTT
GAAATGCAAAGTAAAACGATTGCTGTATTAGGCAGTGGATTACAACAAATTTATCCCAGTCGGCATAAAGGATTAGCGGA
ACAAATTCTAGTTAATAATGGCACGTTGGTATCAGAATTTTTACCCAACCAACCGCCCGTTGCCACTAACTTCCCAAGAC
GAAACCGCATTATTAGTGGCATGTCGCAAGGCGTGTTGGTAGTCGAAGCAAATCAAAAAAGCGGATCACTAATTACCGCC
CGTTATGCCCTAGAGCAAAATCGAGATGTATTTGCCTTACCTGGTAATTTGCATAATCAATATAGCCAAGGATGCCATCA
TCTGATTAAACAAGGGGCAAATTTAGTGGAATCGGTGCAGGATATTATTGAAAATCTCGCTCCTTATTCGTTACCCATGA
ATGGCTTTGCTCCCAACACGACTAGTCAAAATACAGAGTTACCTTTTAATGTTATTGAGCCAACATATCCTGATTTATAT
GCTTTAATCGGCTATAACCCCATTAGTATTGATGAACTGGCGGAACAGTCCAAAATTTCAGTTGATGTCCTGTTAGGGCA
ATTATTGACGCTAGAATTAGAAGAACTCATTGAATGTGAAAGGGGGCTATATAAACGACGATTATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-277)

DprA winged helix domain (DprA_WH)

(316-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Haemophilus influenzae Rd KW20

61.141

100

0.611
  dprA Glaesserella parasuis strain SC1401

50.402

100

0.511
  dprA Vibrio campbellii strain DS40M4

44.077

98.641

0.435
  dprA Vibrio cholerae strain A1552

45.17

95.652

0.432
  dprA Legionella pneumophila strain ERS1305867

39.785

100

0.402
  dprA Acinetobacter baylyi ADP1

38.746

95.38

0.37

Multiple sequence alignment