Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACE6HX_RS08255 Genome accession   NZ_CP170098
Coordinates   1660107..1661144 (+) Length   345 a.a.
NCBI ID   WP_307499638.1    Uniprot ID   -
Organism   Bacillus pumilus strain X14-67     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1655107..1666144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE6HX_RS08230 (ACE6HX_08230) - 1655891..1656148 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  ACE6HX_RS08235 (ACE6HX_08235) - 1656280..1657071 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  ACE6HX_RS08240 (ACE6HX_08240) - 1657095..1658006 (+) 912 WP_375567508.1 helix-turn-helix domain-containing protein -
  ACE6HX_RS08245 (ACE6HX_08245) pgsA 1658082..1658663 (+) 582 WP_034662216.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACE6HX_RS08250 (ACE6HX_08250) cinA 1658680..1659930 (+) 1251 WP_307499637.1 competence/damage-inducible protein A Machinery gene
  ACE6HX_RS08255 (ACE6HX_08255) recA 1660107..1661144 (+) 1038 WP_307499638.1 recombinase RecA Machinery gene
  ACE6HX_RS08260 (ACE6HX_08260) rny 1661644..1663206 (+) 1563 WP_003211958.1 ribonuclease Y -
  ACE6HX_RS08265 (ACE6HX_08265) - 1663295..1664089 (+) 795 WP_034662209.1 TIGR00282 family metallophosphoesterase -
  ACE6HX_RS08270 (ACE6HX_08270) spoVS 1664291..1664551 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37559.76 Da        Isoelectric Point: 4.8329

>NTDB_id=1055016 ACE6HX_RS08255 WP_307499638.1 1660107..1661144(+) (recA) [Bacillus pumilus strain X14-67]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDILLMIQEQ
IREHYGLDTNGVKAAEEEGQEELEI

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1055016 ACE6HX_RS08255 WP_307499638.1 1660107..1661144(+) (recA) [Bacillus pumilus strain X14-67]
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGTAAAGGCTCTATTATGAAACT
AGGAGAGCAAACAGATACACGCATTTCAACAGTACCGAGTGGTTCGTTAGCACTTGATACTGCACTTGGAATAGGTGGAT
ATCCTCGCGGCCGTATTATTGAAGTATATGGTCCAGAGAGTTCTGGTAAAACGACAGTAGCACTTCATGCCATTGCTGAG
GTTCAGCAGCAGGGAGGACAAGCGGCATTTATCGATGCAGAGCATGCGCTCGATCCAGTTTACGCTCAAAAACTAGGTGT
CAATATTGATGAGCTGTTACTTTCTCAGCCTGATACAGGAGAACAAGCACTTGAAATTGCAGAAGCTCTTGTCCGCAGTG
GTGCAGTTGATATTGTTGTTATTGACTCAGTAGCTGCTCTTGTACCAAAAGCAGAGATTGAAGGGGACATGGGTGATTCA
CATGTTGGTTTACAAGCACGTTTGATGTCCCAAGCACTTCGTAAACTATCAGGTGCCATTAATAAATCGAAAACAATTGC
CATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTCATGTTCGGTAACCCTGAAACAACGCCAGGTGGACGTGCGCTTA
AGTTCTATTCGTCTGTTCGTTTAGAAGTGCGCCGTGCTGAACAGCTGAAGCAGGGCAATGACATTATGGGGAATAAAACG
AGAATTAAAGTGGTGAAAAACAAAGTAGCACCGCCATTCCGTATTGCAGAAGTAGACATTATGTACGGTGAAGGAATCTC
AAAAGAGGGCGAAATCATCGACCTTGGAAGCGAACTAGATATCGTACAAAAGAGCGGTGCTTGGTATTCTTATCAAGAGG
AACGTCTTGGGCAAGGCCGCGAAAATGCGAAACAGTTCCTTAAAGAAAACAAAGATATTCTTCTCATGATTCAAGAACAA
ATTAGAGAACACTACGGTTTGGACACAAACGGAGTGAAAGCAGCTGAAGAAGAAGGACAAGAGGAATTGGAAATTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.687

96.232

0.93
  recA Latilactobacillus sakei subsp. sakei 23K

75.077

94.203

0.707
  recA Streptococcus mitis NCTC 12261

66.667

100

0.672
  recA Streptococcus mitis SK321

67.442

99.71

0.672
  recA Streptococcus pneumoniae D39

69.091

95.652

0.661
  recA Streptococcus pneumoniae Rx1

69.091

95.652

0.661
  recA Streptococcus pneumoniae R6

69.091

95.652

0.661
  recA Streptococcus pneumoniae TIGR4

69.091

95.652

0.661
  recA Streptococcus mutans UA159

68.693

95.362

0.655
  recA Streptococcus pyogenes NZ131

67.988

95.072

0.646
  recA Lactococcus lactis subsp. cremoris KW2

66.364

95.652

0.635
  recA Neisseria gonorrhoeae strain FA1090

63.501

97.681

0.62
  recA Neisseria gonorrhoeae MS11

63.501

97.681

0.62
  recA Neisseria gonorrhoeae MS11

63.501

97.681

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.059

98.551

0.612
  recA Ralstonia pseudosolanacearum GMI1000

64.329

95.072

0.612
  recA Helicobacter pylori 26695

64.615

94.203

0.609
  recA Helicobacter pylori strain NCTC11637

64.615

94.203

0.609
  recA Glaesserella parasuis strain SC1401

60.933

99.42

0.606
  recA Acinetobacter baumannii D1279779

61.111

99.13

0.606
  recA Acinetobacter baylyi ADP1

60.641

99.42

0.603
  recA Vibrio cholerae strain A1552

64.174

93.043

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

93.043

0.597
  recA Pseudomonas stutzeri DSM 10701

61.446

96.232

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.783

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

93.623

0.562

Multiple sequence alignment