Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACE6HX_RS08250 Genome accession   NZ_CP170098
Coordinates   1658680..1659930 (+) Length   416 a.a.
NCBI ID   WP_307499637.1    Uniprot ID   -
Organism   Bacillus pumilus strain X14-67     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1653680..1664930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE6HX_RS08225 (ACE6HX_08225) ymfI 1655089..1655817 (+) 729 WP_307499635.1 elongation factor P 5-aminopentanone reductase -
  ACE6HX_RS08230 (ACE6HX_08230) - 1655891..1656148 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  ACE6HX_RS08235 (ACE6HX_08235) - 1656280..1657071 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  ACE6HX_RS08240 (ACE6HX_08240) - 1657095..1658006 (+) 912 WP_375567508.1 helix-turn-helix domain-containing protein -
  ACE6HX_RS08245 (ACE6HX_08245) pgsA 1658082..1658663 (+) 582 WP_034662216.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACE6HX_RS08250 (ACE6HX_08250) cinA 1658680..1659930 (+) 1251 WP_307499637.1 competence/damage-inducible protein A Machinery gene
  ACE6HX_RS08255 (ACE6HX_08255) recA 1660107..1661144 (+) 1038 WP_307499638.1 recombinase RecA Machinery gene
  ACE6HX_RS08260 (ACE6HX_08260) rny 1661644..1663206 (+) 1563 WP_003211958.1 ribonuclease Y -
  ACE6HX_RS08265 (ACE6HX_08265) - 1663295..1664089 (+) 795 WP_034662209.1 TIGR00282 family metallophosphoesterase -
  ACE6HX_RS08270 (ACE6HX_08270) spoVS 1664291..1664551 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45455.57 Da        Isoelectric Point: 5.1381

>NTDB_id=1055015 ACE6HX_RS08250 WP_307499637.1 1658680..1659930(+) (cinA) [Bacillus pumilus strain X14-67]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQGDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAKILARVGEYFYGYGDTSLVREASKALHAHGKTVAAAESLTGGMFSEWLTDLEGASSILSGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGARKLAGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDHTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1055015 ACE6HX_RS08250 WP_307499637.1 1658680..1659930(+) (cinA) [Bacillus pumilus strain X14-67]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGGTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTTATCAGCAAACAGCTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCGCAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACCAAAGATGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGAAAAGAGCTCGTGCTAAATGAAGAAGCATTTGAATCCATTCAAGACTACTT
TCGAAAGACTGGACGAGACATGTCGCCGAATAACCGTAAGCAGGCACTCGTTCTAGAAGGATCTGATGTGCTCGTAAACC
GGTTTGGGATGGCCCCAGGTATGTTTATTCAAGGAGACGATACATTTTATATGTTGCTTCCTGGACCGCCAAGTGAACTG
CATCCGATGTTTGAGAACGAGGCGAAGCCGCTGATTTCTGAGAAACTGGGTTTAAAGGAAAAAATCGTGTCTGTTGTTCT
CCGCTTCTTCGGAATCGGTGAATCACAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCGACGATTG
CACCTCTCGCATCTGACGGTGAAGTGACACTTAGGCTCACGGCTAAGCATGAGGATGAAAAAGAAACGGAGCGTCTGTTA
AAAGAAACAGAAGCGAAAATTTTAGCGCGGGTAGGTGAGTACTTCTACGGGTATGGTGATACATCACTTGTCCGTGAAGC
TTCCAAGGCCTTGCACGCACACGGGAAAACAGTGGCAGCGGCTGAGAGCCTGACTGGCGGAATGTTTTCTGAATGGCTGA
CAGATCTTGAAGGTGCATCGTCGATTTTAAGCGGCAGTGTCGTTTGTTATACAAATCAAGTCAAACAGCAGGTGCTTGGC
TGCCGGGAGGAAACGTTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCTCTAGAGCTTGCTGAAGGTGCTAGAAAGCT
CGCGGGAAGTGATATTGGCATTAGTTTTACGGGTGTAGCAGGCCCTGATACCCACGAGGGACAGCCGGTCGGAAAAGTGT
TCATTGGGCTATCTACGAAAGACCATACAGACGTGTTTGAATGGATGTTTACAGGAAGCCGGTCGGGCATTCGAAAGCGC
GCTGTGAAATACGGTCTGCATCACTTGCTCAATTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.217

99.76

0.74
  cinA Streptococcus mitis SK321

47.743

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.506

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.506

100

0.481
  cinA Streptococcus mutans UA159

47.837

100

0.478
  cinA Streptococcus pneumoniae Rx1

47.268

100

0.478
  cinA Streptococcus pneumoniae R6

47.268

100

0.478
  cinA Streptococcus pneumoniae D39

47.031

100

0.476
  cinA Streptococcus suis isolate S10

43.386

90.865

0.394

Multiple sequence alignment