Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACCB35_RS09765 Genome accession   NZ_CP168654
Coordinates   1948912..1949949 (+) Length   345 a.a.
NCBI ID   WP_044337332.1    Uniprot ID   -
Organism   Rossellomorea sp. FM04394     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1943912..1954949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCB35_RS09740 - 1944409..1944666 (+) 258 WP_044337337.1 DUF3243 domain-containing protein -
  ACCB35_RS09745 - 1944936..1945727 (+) 792 WP_113968160.1 DUF3388 domain-containing protein -
  ACCB35_RS09750 - 1945747..1946640 (+) 894 WP_374056689.1 helix-turn-helix domain-containing protein -
  ACCB35_RS09755 pgsA 1946723..1947301 (+) 579 WP_044337334.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACCB35_RS09760 cinA 1947374..1948609 (+) 1236 WP_374056690.1 competence/damage-inducible protein A Machinery gene
  ACCB35_RS09765 recA 1948912..1949949 (+) 1038 WP_044337332.1 recombinase RecA Machinery gene
  ACCB35_RS09770 rny 1950399..1951958 (+) 1560 WP_374056691.1 ribonuclease Y -
  ACCB35_RS09775 - 1952124..1952927 (+) 804 WP_044337330.1 TIGR00282 family metallophosphoesterase -
  ACCB35_RS09780 spoVS 1953065..1953325 (+) 261 WP_034760060.1 stage V sporulation protein SpoVS -
  ACCB35_RS09785 - 1953427..1954350 (+) 924 WP_374056692.1 dipeptidase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37393.64 Da        Isoelectric Point: 5.0035

>NTDB_id=1044773 ACCB35_RS09765 WP_044337332.1 1948912..1949949(+) (recA) [Rossellomorea sp. FM04394]
MSDRKAALDMALKQIEKQFGKGSIMKLGEQTDRKVVTCPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAQGGQAAFIDAEHALDPEYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDAIVIDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIVDLGSELDIVQKSGAWYSYNEERLGQGRENAKIFLKENPEIRSEIMLK
IREHYGLDTGRAETDDQSELSLLED

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1044773 ACCB35_RS09765 WP_044337332.1 1948912..1949949(+) (recA) [Rossellomorea sp. FM04394]
GTGAGCGATCGTAAAGCAGCCTTAGATATGGCGTTAAAACAAATAGAAAAGCAGTTTGGTAAAGGCTCTATAATGAAGCT
GGGGGAGCAAACTGATAGAAAAGTAGTAACTTGTCCAAGTGGTTCACTAGCGTTGGACGCAGCCTTGGGGGTTGGCGGAT
ATCCTCGAGGAAGAATTATCGAGGTGTATGGTCCGGAATCGTCTGGTAAAACAACAGTAGCACTTCATGCCATTGCAGAA
GTTCAAGCTCAAGGCGGTCAGGCTGCATTTATCGATGCAGAGCACGCACTTGATCCTGAATATGCTCAAAAGCTTGGGGT
AAACATAGATGAATTATTACTTTCTCAACCTGATACAGGTGAGCAGGCGCTGGAAATTGCGGAAGCTTTGGTACGTAGTG
GAGCGGTAGACGCTATCGTTATTGACTCGGTTGCGGCGCTTGTACCGAAAGCGGAAATCGAAGGAGAGATGGGAGATGCT
CACGTAGGTCTTCAAGCCCGTTTAATGTCACAGGCTCTTCGTAAGCTTTCAGGTGCTATTAACAAATCGAAAACCATCGC
GATTTTCATTAACCAAATTCGTGAAAAGGTTGGAGTCATGTTCGGTAATCCTGAGACGACGCCTGGTGGACGCGCACTGA
AGTTCTATTCATCTGTTCGTTTAGAAGTCCGTCGCGCTGAAACACTTAAGCAAGGGAATGAAATGGTAGGGAACAAAACG
AAGATCAAAGTCGTTAAAAATAAAGTAGCTCCACCTTTCCGTGTAGCTGAAGTAGATATCATGTACGGAGAAGGGATTTC
TAAAGAAGGTGAAATCGTGGATCTTGGGTCTGAGTTGGACATCGTTCAAAAGAGTGGTGCCTGGTATTCTTATAACGAAG
AGCGTCTGGGTCAAGGCCGCGAGAATGCGAAGATTTTCCTTAAAGAAAATCCTGAAATCCGCAGTGAAATCATGCTGAAA
ATCCGTGAACACTACGGTTTGGACACAGGTCGTGCCGAAACGGATGATCAAAGTGAATTAAGTCTTTTAGAGGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.058

95.362

0.849
  recA Latilactobacillus sakei subsp. sakei 23K

76

94.203

0.716
  recA Streptococcus pneumoniae R6

67.836

99.13

0.672
  recA Streptococcus pneumoniae TIGR4

67.836

99.13

0.672
  recA Streptococcus pneumoniae Rx1

67.836

99.13

0.672
  recA Streptococcus pneumoniae D39

67.836

99.13

0.672
  recA Streptococcus mutans UA159

70.213

95.362

0.67
  recA Streptococcus mitis NCTC 12261

69.369

96.522

0.67
  recA Streptococcus mitis SK321

69.069

96.522

0.667
  recA Streptococcus pyogenes NZ131

69.512

95.072

0.661
  recA Lactococcus lactis subsp. cremoris KW2

67.576

95.652

0.646
  recA Neisseria gonorrhoeae strain FA1090

64.327

99.13

0.638
  recA Neisseria gonorrhoeae MS11

64.327

99.13

0.638
  recA Neisseria gonorrhoeae MS11

64.327

99.13

0.638
  recA Ralstonia pseudosolanacearum GMI1000

69.329

90.725

0.629
  recA Acinetobacter baylyi ADP1

61.494

100

0.62
  recA Acinetobacter baumannii D1279779

61.628

99.71

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

94.783

0.612
  recA Vibrio cholerae strain A1552

65.421

93.043

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.421

93.043

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

94.783

0.6
  recA Helicobacter pylori strain NCTC11637

63.692

94.203

0.6
  recA Helicobacter pylori 26695

63.692

94.203

0.6
  recA Pseudomonas stutzeri DSM 10701

64.375

92.754

0.597
  recA Glaesserella parasuis strain SC1401

60.058

99.42

0.597
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.615

94.203

0.571

Multiple sequence alignment