Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACCB35_RS09760 Genome accession   NZ_CP168654
Coordinates   1947374..1948609 (+) Length   411 a.a.
NCBI ID   WP_374056690.1    Uniprot ID   -
Organism   Rossellomorea sp. FM04394     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1942374..1953609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCB35_RS09735 ymfI 1943603..1944319 (+) 717 WP_374056688.1 elongation factor P 5-aminopentanone reductase -
  ACCB35_RS09740 - 1944409..1944666 (+) 258 WP_044337337.1 DUF3243 domain-containing protein -
  ACCB35_RS09745 - 1944936..1945727 (+) 792 WP_113968160.1 DUF3388 domain-containing protein -
  ACCB35_RS09750 - 1945747..1946640 (+) 894 WP_374056689.1 helix-turn-helix domain-containing protein -
  ACCB35_RS09755 pgsA 1946723..1947301 (+) 579 WP_044337334.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACCB35_RS09760 cinA 1947374..1948609 (+) 1236 WP_374056690.1 competence/damage-inducible protein A Machinery gene
  ACCB35_RS09765 recA 1948912..1949949 (+) 1038 WP_044337332.1 recombinase RecA Machinery gene
  ACCB35_RS09770 rny 1950399..1951958 (+) 1560 WP_374056691.1 ribonuclease Y -
  ACCB35_RS09775 - 1952124..1952927 (+) 804 WP_044337330.1 TIGR00282 family metallophosphoesterase -
  ACCB35_RS09780 spoVS 1953065..1953325 (+) 261 WP_034760060.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44616.03 Da        Isoelectric Point: 5.3263

>NTDB_id=1044772 ACCB35_RS09760 WP_374056690.1 1947374..1948609(+) (cinA) [Rossellomorea sp. FM04394]
MNAEIIAVGSELLLGQIVNSNAQFISEQLAEVGVNVYYHTSVGDNPERLHHAITVAEGRADLLIFTGGLGPTKDDLTKET
IAKSLGTTLTMDEDALESIKSYFNKVNREMTPNNEKQALILAGSQVLKNEHGMAPGMLLKKDDKAYMLLPGPPSEMKPMF
SKYGKQAIFSLLKKKEIIHSRVMRFFGIGEAQLETELEDLIDKQTNPTIAPLAGDGEVTLRLTAKHESKDIAASLLDTVE
ADIMAIVGDYFYGYNQDSLFEVGFKLLKEKGLTLSCAESLTGGLFQAQLASLPGASFILNGGVVCYQDEVKKTILSVKES
TLEEHTSVSEQCARELAENVKELFSSDIGISFTGVAGPGSHEGKPAGTVWIGLSIKGQPTKAFLLNLGGGRNANRVRTAK
YGWHYLIKELS

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=1044772 ACCB35_RS09760 WP_374056690.1 1947374..1948609(+) (cinA) [Rossellomorea sp. FM04394]
ATGAATGCAGAAATCATAGCGGTCGGATCTGAACTACTATTAGGTCAGATCGTCAATTCCAATGCTCAATTCATATCAGA
GCAACTGGCTGAAGTGGGGGTGAATGTCTATTACCACACTAGTGTGGGAGATAACCCTGAACGGTTGCATCACGCTATTA
CAGTAGCCGAAGGGCGAGCAGACCTGTTGATTTTCACGGGGGGACTTGGACCGACGAAGGATGATTTAACGAAAGAAACA
ATAGCAAAGTCATTAGGTACAACTTTGACCATGGACGAAGATGCGTTGGAATCAATTAAAAGCTACTTTAACAAAGTGAA
TCGGGAAATGACCCCCAATAATGAAAAGCAGGCTCTCATATTAGCAGGCTCTCAAGTACTGAAGAACGAACACGGTATGG
CTCCTGGGATGCTACTGAAAAAGGATGATAAAGCATACATGCTTTTACCCGGTCCACCATCTGAAATGAAACCTATGTTT
AGTAAATACGGCAAACAAGCGATCTTTTCTTTATTAAAGAAGAAAGAAATCATCCATTCCCGGGTAATGCGCTTTTTCGG
CATTGGTGAAGCTCAGTTGGAAACAGAGCTGGAAGACTTGATCGACAAACAAACCAATCCTACCATTGCTCCATTGGCGG
GTGATGGGGAAGTGACCCTGAGGTTGACGGCGAAGCACGAGTCAAAGGATATTGCCGCCTCGCTTTTGGATACAGTAGAA
GCGGATATTATGGCTATTGTAGGAGATTACTTCTATGGCTACAATCAGGATTCTCTCTTTGAGGTAGGATTCAAATTGTT
AAAAGAGAAAGGTCTCACCTTATCCTGTGCAGAAAGCTTAACCGGGGGACTCTTTCAAGCTCAATTAGCCTCGTTACCTG
GAGCTTCATTTATTCTGAATGGCGGGGTGGTTTGTTACCAGGATGAAGTTAAGAAGACGATTTTATCTGTGAAAGAGAGT
ACATTGGAAGAACATACATCAGTAAGTGAACAGTGTGCACGGGAACTTGCTGAAAATGTAAAAGAGCTTTTCTCATCAGA
TATAGGAATCAGTTTCACAGGAGTAGCTGGCCCGGGATCACACGAAGGTAAGCCCGCAGGAACCGTGTGGATTGGATTGT
CTATTAAAGGTCAACCAACTAAAGCGTTTCTATTGAATCTCGGCGGTGGAAGGAATGCAAATCGAGTGAGAACAGCGAAA
TACGGCTGGCATTATTTAATTAAGGAATTAAGTTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(260-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-166)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

57.108

99.27

0.567
  cinA Streptococcus mutans UA159

51.372

97.567

0.501
  cinA Streptococcus pneumoniae TIGR4

47.608

100

0.484
  cinA Streptococcus mitis SK321

49.38

98.054

0.484
  cinA Streptococcus mitis NCTC 12261

49.132

98.054

0.482
  cinA Streptococcus pneumoniae Rx1

47.368

100

0.482
  cinA Streptococcus pneumoniae R6

47.368

100

0.482
  cinA Streptococcus pneumoniae D39

47.129

100

0.479
  cinA Streptococcus suis isolate S10

40.876

100

0.409

Multiple sequence alignment