Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACEPXG_RS06975 Genome accession   NZ_CP168496
Coordinates   1499440..1500471 (+) Length   343 a.a.
NCBI ID   WP_391209822.1    Uniprot ID   -
Organism   Psychrobacillus sp. L4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1494440..1505471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPXG_RS06950 (ACEPXG_06950) ymfI 1494709..1495440 (+) 732 WP_391208760.1 elongation factor P 5-aminopentanone reductase -
  ACEPXG_RS06955 (ACEPXG_06955) - 1495630..1496436 (+) 807 WP_151699534.1 DUF3388 domain-containing protein -
  ACEPXG_RS06960 (ACEPXG_06960) - 1496453..1497301 (+) 849 WP_391208763.1 helix-turn-helix domain-containing protein -
  ACEPXG_RS06965 (ACEPXG_06965) pgsA 1497359..1497937 (+) 579 WP_391209820.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACEPXG_RS06970 (ACEPXG_06970) cinA 1497955..1499211 (+) 1257 WP_391208765.1 competence/damage-inducible protein A Machinery gene
  ACEPXG_RS06975 (ACEPXG_06975) recA 1499440..1500471 (+) 1032 WP_391209822.1 recombinase RecA Machinery gene
  ACEPXG_RS06980 (ACEPXG_06980) rny 1500668..1502224 (+) 1557 WP_151699538.1 ribonuclease Y -
  ACEPXG_RS06985 (ACEPXG_06985) - 1502279..1503076 (+) 798 WP_391208768.1 TIGR00282 family metallophosphoesterase -
  ACEPXG_RS06990 (ACEPXG_06990) - 1503162..1503428 (+) 267 WP_093535025.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37015.14 Da        Isoelectric Point: 4.7771

>NTDB_id=1044263 ACEPXG_RS06975 WP_391209822.1 1499440..1500471(+) (recA) [Psychrobacillus sp. L4]
MALKQIEKQFGKGSIMRLGEKTDREISTSSSGSLALDAALGIGGYPRGRIIEIYGPESSGKTTVALHAIAEIQKTGGQAA
FIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVEILVIDSVAALVPKAEIEGEMGDSHIGLQARLM
SQALRKLSGAINKSNTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEAIKQGTDIVGNKTKIKVVKNKV
APPFKTAEVDIMYGEGISQEGEIIDIGSDMDIVQKSGSWYAYNEERIGQGRENAKQFLKENPTAKNEIAAKIRESMGMTA
SSLTIAAHEVEDDEEFELLLTEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=1044263 ACEPXG_RS06975 WP_391209822.1 1499440..1500471(+) (recA) [Psychrobacillus sp. L4]
ATGGCTTTAAAACAAATAGAGAAACAATTTGGTAAAGGTTCAATTATGAGACTTGGGGAAAAGACAGATAGAGAAATTTC
TACTTCTTCTAGTGGTTCTTTAGCACTTGATGCAGCATTAGGAATAGGTGGTTATCCAAGAGGTCGTATTATTGAAATAT
ATGGTCCAGAAAGTTCAGGTAAAACTACTGTAGCTCTTCATGCAATTGCAGAAATACAAAAAACTGGTGGGCAAGCAGCT
TTTATTGATGCAGAGCATGCATTAGATCCAGTTTATGCACAAAAACTAGGCGTAAATATTGATGAGTTACTTTTGTCTCA
ACCTGATACAGGAGAGCAAGCACTTGAAATTGCAGAAGCATTAGTACGAAGTGGTGCTGTGGAAATTTTAGTAATTGACT
CTGTTGCTGCTTTAGTACCGAAAGCAGAAATCGAAGGAGAAATGGGAGATTCACATATTGGCCTTCAAGCTCGTTTAATG
TCACAAGCATTACGCAAGCTTTCTGGTGCTATTAACAAATCAAACACTATTGCTATTTTCATAAATCAAATTCGTGAGAA
AGTAGGTGTAATGTTTGGAAATCCAGAAGTAACACCAGGTGGACGTGCACTTAAGTTCTATAGTTCGGTACGTTTAGAAG
TTAGACGTGCAGAAGCGATTAAACAAGGAACTGATATTGTAGGCAATAAAACAAAGATTAAAGTAGTAAAAAACAAAGTA
GCACCTCCATTTAAAACTGCAGAAGTAGATATTATGTATGGTGAAGGAATTTCTCAAGAAGGAGAAATTATCGATATAGG
CTCAGATATGGATATTGTACAAAAAAGTGGTTCTTGGTATGCGTACAATGAAGAACGCATTGGTCAAGGTAGAGAAAATG
CGAAACAATTCCTAAAAGAGAATCCAACAGCGAAGAATGAAATAGCTGCTAAAATACGTGAATCTATGGGAATGACTGCT
AGTTCCTTAACAATTGCTGCACATGAGGTAGAAGATGATGAAGAATTTGAATTATTATTAACGGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(2-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.164

92.711

0.799
  recA Latilactobacillus sakei subsp. sakei 23K

75.786

92.711

0.703
  recA Streptococcus pyogenes NZ131

66.764

100

0.668
  recA Streptococcus pneumoniae Rx1

69.782

93.586

0.653
  recA Streptococcus mitis NCTC 12261

69.782

93.586

0.653
  recA Streptococcus mitis SK321

69.782

93.586

0.653
  recA Streptococcus pneumoniae D39

69.782

93.586

0.653
  recA Streptococcus pneumoniae R6

69.782

93.586

0.653
  recA Streptococcus pneumoniae TIGR4

69.782

93.586

0.653
  recA Streptococcus mutans UA159

69.159

93.586

0.647
  recA Lactococcus lactis subsp. cremoris KW2

67.692

94.752

0.641
  recA Ralstonia pseudosolanacearum GMI1000

65.549

95.627

0.627
  recA Vibrio cholerae strain A1552

63.798

98.251

0.627
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.798

98.251

0.627
  recA Acinetobacter baylyi ADP1

63.018

98.542

0.621
  recA Acinetobacter baumannii D1279779

62.832

98.834

0.621
  recA Neisseria gonorrhoeae MS11

66.774

90.379

0.603
  recA Neisseria gonorrhoeae MS11

66.774

90.379

0.603
  recA Neisseria gonorrhoeae strain FA1090

66.774

90.379

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.465

92.711

0.598
  recA Helicobacter pylori strain NCTC11637

64.151

92.711

0.595
  recA Pseudomonas stutzeri DSM 10701

63.24

93.586

0.592
  recA Glaesserella parasuis strain SC1401

60.961

97.085

0.592
  recA Helicobacter pylori 26695

63.836

92.711

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.5

93.294

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.179

90.962

0.566

Multiple sequence alignment