Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACEPXG_RS06970 Genome accession   NZ_CP168496
Coordinates   1497955..1499211 (+) Length   418 a.a.
NCBI ID   WP_391208765.1    Uniprot ID   -
Organism   Psychrobacillus sp. L4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1492955..1504211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPXG_RS06945 (ACEPXG_06945) yfmH 1493412..1494716 (+) 1305 WP_391208758.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACEPXG_RS06950 (ACEPXG_06950) ymfI 1494709..1495440 (+) 732 WP_391208760.1 elongation factor P 5-aminopentanone reductase -
  ACEPXG_RS06955 (ACEPXG_06955) - 1495630..1496436 (+) 807 WP_151699534.1 DUF3388 domain-containing protein -
  ACEPXG_RS06960 (ACEPXG_06960) - 1496453..1497301 (+) 849 WP_391208763.1 helix-turn-helix domain-containing protein -
  ACEPXG_RS06965 (ACEPXG_06965) pgsA 1497359..1497937 (+) 579 WP_391209820.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACEPXG_RS06970 (ACEPXG_06970) cinA 1497955..1499211 (+) 1257 WP_391208765.1 competence/damage-inducible protein A Machinery gene
  ACEPXG_RS06975 (ACEPXG_06975) recA 1499440..1500471 (+) 1032 WP_391209822.1 recombinase RecA Machinery gene
  ACEPXG_RS06980 (ACEPXG_06980) rny 1500668..1502224 (+) 1557 WP_151699538.1 ribonuclease Y -
  ACEPXG_RS06985 (ACEPXG_06985) - 1502279..1503076 (+) 798 WP_391208768.1 TIGR00282 family metallophosphoesterase -
  ACEPXG_RS06990 (ACEPXG_06990) - 1503162..1503428 (+) 267 WP_093535025.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 46064.19 Da        Isoelectric Point: 5.3275

>NTDB_id=1044262 ACEPXG_RS06970 WP_391208765.1 1497955..1499211(+) (cinA) [Psychrobacillus sp. L4]
MKAEIIAVGSELLLGQISNTNARFISSQLAEHGIDVYYHTVVGDNSKRLLETIKLAEQRADLIIFTGGLGPTKDDLTKET
IANHLNKKLIMNEQALEYIEEFFKKMNREMTENNKKQALVLEGCTVLQNNHGMAPGMLLIVDKHSYMLLPGPPKEMEPMF
QFEAKPLLQKMLNGETIILSHVMRFYGIGEAELETKVQDLLENQLNPTLAPLASDGEVTLRLTAKSNTEEEAWGKIEVLQ
NEIFNRVGKFVYGYNNDSLASKLQEILSENHLTISAAESMTAGLFQSELASIPGMGAVLVGGMITYTEDIKVEKLGVKKQ
VITEYGVVSSECAEAMAMRIKEKFGTNIGIGITGAAGPDAHGGQPAGTVWIGIVLNDLAPVSYMLNLSGMRNTNRLRAVK
FTIHYLIQLLSEQGYKTI

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1044262 ACEPXG_RS06970 WP_391208765.1 1497955..1499211(+) (cinA) [Psychrobacillus sp. L4]
ATGAAAGCAGAGATTATTGCAGTTGGTTCAGAATTATTATTAGGGCAAATTTCCAATACAAATGCACGATTTATTTCTTC
TCAATTAGCCGAGCATGGGATTGATGTGTATTATCACACAGTAGTAGGCGATAATTCCAAACGATTATTAGAAACCATTA
AACTCGCAGAACAACGAGCAGATTTAATCATTTTCACTGGTGGATTAGGTCCAACTAAAGATGATTTAACAAAAGAAACG
ATCGCTAACCACTTGAATAAAAAATTAATCATGAACGAACAAGCCTTAGAATACATTGAAGAGTTCTTCAAAAAAATGAA
TCGTGAAATGACTGAAAACAATAAAAAACAAGCATTGGTATTAGAAGGTTGTACTGTATTACAAAATAACCATGGAATGG
CACCTGGAATGTTGCTGATAGTAGATAAACACTCTTATATGCTACTACCAGGCCCCCCCAAAGAAATGGAGCCAATGTTC
CAATTTGAAGCGAAGCCGCTACTTCAAAAAATGTTAAATGGAGAAACAATCATTTTATCGCATGTTATGCGTTTTTATGG
AATTGGCGAAGCCGAACTCGAAACAAAAGTGCAGGACTTATTGGAAAATCAATTGAATCCAACATTAGCACCACTTGCAT
CAGATGGCGAAGTTACGTTACGACTTACTGCTAAAAGTAATACAGAGGAAGAGGCATGGGGAAAAATTGAAGTGCTTCAA
AATGAGATTTTTAATCGAGTAGGAAAATTCGTGTATGGGTATAACAATGACTCTCTTGCCTCTAAGCTGCAGGAAATATT
AAGCGAAAATCATTTAACTATTTCTGCTGCGGAAAGTATGACTGCAGGATTATTTCAATCAGAGCTTGCATCAATTCCTG
GAATGGGAGCCGTATTAGTGGGTGGTATGATAACTTACACTGAAGATATAAAAGTGGAGAAACTGGGAGTTAAAAAACAA
GTTATTACCGAATATGGTGTTGTATCTAGTGAATGTGCTGAAGCCATGGCGATGCGTATTAAAGAAAAGTTTGGAACGAA
CATTGGGATTGGTATTACAGGTGCAGCTGGTCCAGATGCACACGGTGGACAGCCTGCTGGTACTGTTTGGATAGGCATTG
TATTGAACGATTTGGCCCCTGTTTCATACATGCTAAACCTTTCAGGAATGAGAAACACCAACAGATTGAGAGCTGTGAAG
TTTACCATCCATTATTTAATCCAGTTACTAAGTGAACAAGGATATAAAACAATTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.942

98.565

0.512
  cinA Streptococcus mitis SK321

47.12

91.388

0.431
  cinA Streptococcus pneumoniae TIGR4

46.597

91.388

0.426
  cinA Streptococcus mitis NCTC 12261

46.335

91.388

0.423
  cinA Streptococcus pneumoniae Rx1

46.335

91.388

0.423
  cinA Streptococcus pneumoniae R6

46.335

91.388

0.423
  cinA Streptococcus pneumoniae D39

46.073

91.388

0.421
  cinA Streptococcus mutans UA159

45.623

90.191

0.411

Multiple sequence alignment