Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACEPXD_RS06830 Genome accession   NZ_CP168493
Coordinates   1445066..1446127 (+) Length   353 a.a.
NCBI ID   WP_391121438.1    Uniprot ID   -
Organism   Psychrobacillus sp. L3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1440066..1451127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPXD_RS06805 (ACEPXD_06805) ymfI 1440347..1441093 (+) 747 WP_391121429.1 elongation factor P 5-aminopentanone reductase -
  ACEPXD_RS06810 (ACEPXD_06810) - 1441283..1442089 (+) 807 WP_391123066.1 DUF3388 domain-containing protein -
  ACEPXD_RS06815 (ACEPXD_06815) - 1442106..1442957 (+) 852 WP_391121432.1 helix-turn-helix domain-containing protein -
  ACEPXD_RS06820 (ACEPXD_06820) pgsA 1443015..1443593 (+) 579 WP_391123069.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACEPXD_RS06825 (ACEPXD_06825) cinA 1443611..1444867 (+) 1257 WP_391121435.1 competence/damage-inducible protein A Machinery gene
  ACEPXD_RS06830 (ACEPXD_06830) recA 1445066..1446127 (+) 1062 WP_391121438.1 recombinase RecA Machinery gene
  ACEPXD_RS06835 (ACEPXD_06835) rny 1446323..1447879 (+) 1557 WP_391121441.1 ribonuclease Y -
  ACEPXD_RS06840 (ACEPXD_06840) - 1447936..1448733 (+) 798 WP_391121444.1 TIGR00282 family metallophosphoesterase -
  ACEPXD_RS06845 (ACEPXD_06845) - 1448819..1449085 (+) 267 WP_093535025.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38115.39 Da        Isoelectric Point: 4.7951

>NTDB_id=1044225 ACEPXD_RS06830 WP_391121438.1 1445066..1446127(+) (recA) [Psychrobacillus sp. L3]
MANDRKAALEMALKQIEKQFGKGSIMRLGEKTDREISTSSSGSLALDAALGIGGYPRGRIIEIYGPESSGKTTVALHAIA
EIQKTGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVEILVIDSVAALVPKAEIEGEMGD
SHIGLQARLMSQALRKLSGAINKSNTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEAIKQGTDIVGNK
TKIKVVKNKVAPPFKTAEVDIMYGEGISQEGEIIDIGSDMDIVQKSGSWYAYNEERIGQGRENAKQFLKENPTAKNEIAA
KIRESMGMTASSLTIAAHEVEDDEEFELLLTEE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1044225 ACEPXD_RS06830 WP_391121438.1 1445066..1446127(+) (recA) [Psychrobacillus sp. L3]
TTGGCAAATGATCGTAAAGCAGCTTTAGAAATGGCTTTAAAACAAATAGAGAAACAATTTGGTAAAGGTTCAATTATGAG
ACTTGGAGAAAAGACAGATAGAGAGATTTCTACTTCTTCTAGTGGCTCTTTAGCACTTGATGCCGCATTAGGAATAGGTG
GATATCCAAGAGGTCGTATTATTGAAATATATGGTCCGGAAAGTTCCGGTAAAACAACTGTAGCTCTTCATGCCATTGCA
GAAATACAAAAAACTGGTGGGCAAGCAGCTTTTATTGATGCAGAGCATGCATTAGACCCAGTTTATGCACAAAAACTAGG
TGTAAATATTGATGAGTTACTTTTGTCTCAACCTGATACAGGAGAGCAAGCACTTGAAATTGCAGAGGCATTAGTACGAA
GTGGTGCTGTGGAAATTTTAGTAATTGACTCTGTTGCTGCTTTAGTACCGAAAGCAGAAATCGAAGGAGAAATGGGAGAT
TCACATATTGGTCTTCAAGCTCGTTTAATGTCACAAGCATTACGTAAGCTTTCTGGTGCTATTAACAAATCAAACACTAT
AGCTATTTTCATCAATCAAATTCGTGAAAAAGTAGGTGTAATGTTTGGAAATCCAGAAGTAACACCAGGTGGACGTGCAC
TTAAGTTCTATAGTTCGGTACGTTTAGAAGTTAGACGTGCAGAAGCGATTAAACAAGGAACTGATATTGTAGGTAATAAA
ACAAAGATTAAAGTAGTAAAAAACAAAGTAGCACCTCCATTTAAAACTGCAGAAGTAGATATTATGTATGGTGAAGGAAT
TTCTCAAGAAGGAGAAATTATCGATATAGGTTCAGATATGGATATTGTACAAAAAAGTGGTTCTTGGTATGCATACAATG
AAGAACGCATTGGTCAAGGTAGAGAAAATGCGAAACAATTCCTAAAAGAGAATCCAACAGCGAAGAATGAAATAGCTGCT
AAAATACGTGAATCTATGGGAATGACTGCTAGTTCCTTAACAATTGCTGCACATGAGGTAGAAGACGATGAAGAATTTGA
ATTATTATTAACGGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.583

92.351

0.79
  recA Latilactobacillus sakei subsp. sakei 23K

75.152

93.484

0.703
  recA Streptococcus pyogenes NZ131

65.537

100

0.657
  recA Streptococcus mitis SK321

68.997

93.201

0.643
  recA Streptococcus mitis NCTC 12261

68.997

93.201

0.643
  recA Streptococcus pneumoniae R6

68.997

93.201

0.643
  recA Streptococcus pneumoniae TIGR4

68.997

93.201

0.643
  recA Streptococcus pneumoniae Rx1

68.997

93.201

0.643
  recA Streptococcus pneumoniae D39

68.997

93.201

0.643
  recA Streptococcus mutans UA159

68.072

94.051

0.64
  recA Lactococcus lactis subsp. cremoris KW2

66.967

94.334

0.632
  recA Vibrio cholerae strain A1552

62.644

98.584

0.618
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.644

98.584

0.618
  recA Acinetobacter baylyi ADP1

61.891

98.867

0.612
  recA Acinetobacter baumannii D1279779

61.714

99.15

0.612
  recA Ralstonia pseudosolanacearum GMI1000

65.549

92.918

0.609
  recA Neisseria gonorrhoeae strain FA1090

65.741

91.785

0.603
  recA Neisseria gonorrhoeae MS11

65.741

91.785

0.603
  recA Neisseria gonorrhoeae MS11

65.741

91.785

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.918

93.201

0.586
  recA Glaesserella parasuis strain SC1401

60.882

96.317

0.586
  recA Pseudomonas stutzeri DSM 10701

62.349

94.051

0.586
  recA Helicobacter pylori strain NCTC11637

63.385

92.068

0.584
  recA Helicobacter pylori 26695

63.077

92.068

0.581
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.818

93.484

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.491

91.218

0.561

Multiple sequence alignment