Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACEPXD_RS06825 Genome accession   NZ_CP168493
Coordinates   1443611..1444867 (+) Length   418 a.a.
NCBI ID   WP_391121435.1    Uniprot ID   -
Organism   Psychrobacillus sp. L3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1438611..1449867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPXD_RS06800 (ACEPXD_06800) yfmH 1439065..1440369 (+) 1305 WP_391121426.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACEPXD_RS06805 (ACEPXD_06805) ymfI 1440347..1441093 (+) 747 WP_391121429.1 elongation factor P 5-aminopentanone reductase -
  ACEPXD_RS06810 (ACEPXD_06810) - 1441283..1442089 (+) 807 WP_391123066.1 DUF3388 domain-containing protein -
  ACEPXD_RS06815 (ACEPXD_06815) - 1442106..1442957 (+) 852 WP_391121432.1 helix-turn-helix domain-containing protein -
  ACEPXD_RS06820 (ACEPXD_06820) pgsA 1443015..1443593 (+) 579 WP_391123069.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACEPXD_RS06825 (ACEPXD_06825) cinA 1443611..1444867 (+) 1257 WP_391121435.1 competence/damage-inducible protein A Machinery gene
  ACEPXD_RS06830 (ACEPXD_06830) recA 1445066..1446127 (+) 1062 WP_391121438.1 recombinase RecA Machinery gene
  ACEPXD_RS06835 (ACEPXD_06835) rny 1446323..1447879 (+) 1557 WP_391121441.1 ribonuclease Y -
  ACEPXD_RS06840 (ACEPXD_06840) - 1447936..1448733 (+) 798 WP_391121444.1 TIGR00282 family metallophosphoesterase -
  ACEPXD_RS06845 (ACEPXD_06845) - 1448819..1449085 (+) 267 WP_093535025.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 46174.43 Da        Isoelectric Point: 5.6955

>NTDB_id=1044224 ACEPXD_RS06825 WP_391121435.1 1443611..1444867(+) (cinA) [Psychrobacillus sp. L3]
MKAEIIAVGSELLLGQISNTNARFISSQLAELGIDVYYHTVVGDNSKRLFETIKLAEQRADLIIFTGGLGPTKDDLTKET
IATYLNKKLIMNEHALKYIEEFFKRMNREMTENNKKQALVLDGCTVLSNKHGMAPGMLLTVDKHFYMLLPGPPKEMEPMF
QFEAKPLLQKLLNGETIILSHVMRFYGIGEAELETKVQDLLENQLNPTLAPLASDGEVTLRLTAKSNTEEEAWGKIEMLQ
NEIFNRVGKFVYGYNNDSLASKLQEILSENHLTISAAESMTAGLFQSELASIPGMGAVLVGGMITYTEDIKVEKLGVKKQ
VITEYGVVSSECAEAMAMRIKEKFGTNIGIGITGAAGPDAHGGQPAGTVWIGIVLNDLTPVSYMLNLSGMRNTNRLRAVK
FTIHYLIQLLSEQGYKTI

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1044224 ACEPXD_RS06825 WP_391121435.1 1443611..1444867(+) (cinA) [Psychrobacillus sp. L3]
ATGAAAGCAGAGATCATTGCAGTTGGTTCAGAATTATTATTAGGGCAAATTTCCAATACAAATGCACGATTTATTTCTTC
TCAATTAGCCGAGCTTGGGATTGATGTGTATTATCACACAGTCGTGGGTGATAATTCCAAACGATTATTTGAAACCATTA
AACTAGCAGAACAACGTGCGGATTTAATCATTTTCACTGGCGGATTAGGTCCAACTAAAGATGATTTAACAAAAGAAACG
ATCGCTACATACTTGAATAAAAAATTAATCATGAACGAACATGCCTTAAAATACATTGAAGAGTTTTTCAAAAGAATGAA
TCGCGAAATGACAGAAAACAATAAAAAGCAGGCATTAGTATTAGATGGATGTACTGTACTATCTAATAAGCATGGAATGG
CACCAGGAATGTTGCTGACAGTAGATAAACACTTTTATATGCTACTACCAGGTCCTCCAAAAGAAATGGAGCCAATGTTC
CAATTTGAAGCGAAGCCACTACTTCAAAAACTGTTAAATGGAGAAACCATCATTTTATCGCATGTTATGCGTTTTTATGG
AATTGGTGAAGCGGAACTCGAAACAAAAGTGCAGGACTTATTGGAAAATCAATTGAATCCAACATTAGCACCACTTGCTT
CAGATGGAGAAGTTACTTTACGACTTACTGCTAAGAGTAATACAGAGGAAGAGGCATGGGGGAAAATTGAAATGCTTCAA
AATGAGATTTTCAATCGAGTAGGAAAATTCGTGTATGGGTATAACAATGACTCTCTTGCCTCTAAACTGCAGGAAATATT
AAGCGAAAATCATTTAACTATTTCTGCTGCGGAAAGTATGACTGCAGGATTATTTCAATCAGAGCTTGCATCAATTCCTG
GAATGGGAGCAGTATTAGTGGGTGGTATGATAACTTATACTGAAGATATAAAAGTGGAGAAACTCGGAGTTAAAAAACAA
GTTATTACCGAATATGGTGTTGTATCTAGTGAATGTGCAGAAGCCATGGCGATGCGTATTAAAGAAAAGTTTGGAACGAA
CATTGGGATTGGTATTACAGGAGCAGCTGGTCCAGATGCACACGGTGGACAGCCTGCTGGTACTGTTTGGATAGGCATTG
TATTGAACGATTTGACCCCTGTTTCATACATGCTAAACCTTTCAGGAATGAGAAACACCAACAGATTGAGAGCTGTGAAG
TTTACCATCCATTATTTAATCCAATTGTTAAGTGAACAAGGATATAAAACAATTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.699

98.565

0.51
  cinA Streptococcus mitis SK321

46.597

91.388

0.426
  cinA Streptococcus pneumoniae TIGR4

45.641

93.301

0.426
  cinA Streptococcus pneumoniae R6

45.385

93.301

0.423
  cinA Streptococcus pneumoniae Rx1

45.385

93.301

0.423
  cinA Streptococcus pneumoniae D39

45.128

93.301

0.421
  cinA Streptococcus mitis NCTC 12261

45.812

91.388

0.419
  cinA Streptococcus mutans UA159

45.889

90.191

0.414

Multiple sequence alignment