Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACDZ29_RS19320 Genome accession   NZ_CP168135
Coordinates   3846065..3847111 (+) Length   348 a.a.
NCBI ID   WP_375088367.1    Uniprot ID   -
Organism   Peribacillus sp. RS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3841065..3852111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDZ29_RS19295 (ACDZ29_19130) - 3841510..3841767 (+) 258 WP_289324434.1 DUF3243 domain-containing protein -
  ACDZ29_RS19300 (ACDZ29_19135) - 3842007..3842798 (+) 792 WP_289324435.1 DUF3388 domain-containing protein -
  ACDZ29_RS19305 (ACDZ29_19140) - 3842807..3843715 (+) 909 WP_353957901.1 RodZ family helix-turn-helix domain-containing protein -
  ACDZ29_RS19310 (ACDZ29_19145) pgsA 3843878..3844462 (+) 585 WP_034313524.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACDZ29_RS19315 (ACDZ29_19150) cinA 3844485..3845717 (+) 1233 WP_375091170.1 competence/damage-inducible protein A Machinery gene
  ACDZ29_RS19320 (ACDZ29_19155) recA 3846065..3847111 (+) 1047 WP_375088367.1 recombinase RecA Machinery gene
  ACDZ29_RS19325 (ACDZ29_19160) rny 3847462..3849021 (+) 1560 WP_289317097.1 ribonuclease Y -
  ACDZ29_RS19330 (ACDZ29_19165) - 3849175..3849972 (+) 798 WP_375088368.1 TIGR00282 family metallophosphoesterase -
  ACDZ29_RS19335 (ACDZ29_19170) spoVS 3850147..3850407 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -
  ACDZ29_RS19340 (ACDZ29_19175) - 3850546..3851469 (+) 924 WP_289324438.1 dipeptidase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38062.17 Da        Isoelectric Point: 4.7928

>NTDB_id=1042486 ACDZ29_RS19320 WP_375088367.1 3846065..3847111(+) (recA) [Peribacillus sp. RS7]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDRRISTISSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQKTGGTAAFIDAEHALDPAYSEKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARMMSQALRKLSGAINKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNEIVGNKT
KIKVVKNKVAPPFRQAEVDIMYGQGISQEGEIIDMGADLDIVLKSGSWYSYNEERVGQGRENAKLFLKENQDIALEISRK
IRDHYNLDGEHELPPEENETEEHFELLD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1042486 ACDZ29_RS19320 WP_375088367.1 3846065..3847111(+) (recA) [Peribacillus sp. RS7]
GTGAGTGATCGTCAAGCGGCTTTAGATATGGCGTTAAAACAAATTGAAAAACAATTTGGTAAAGGTTCTATTATGAAACT
TGGGGAACAGACTGATCGTAGGATTTCAACGATTTCAAGCGGTTCTTTAGCATTGGACGTAGCATTGGGAGTGGGCGGAT
ATCCAAGAGGCCGGGTCATTGAGATATATGGACCTGAAAGCTCCGGTAAAACGACTGTTGCCTTACATGCTATTGCAGAA
GTACAAAAAACTGGAGGCACGGCTGCATTCATTGATGCCGAGCATGCTTTAGATCCAGCGTATTCAGAAAAACTTGGTGT
GAATATTGATGAGTTACTGCTTTCGCAGCCTGATACTGGTGAACAAGCCTTAGAGATCGCTGAAGCGTTAGTTCGAAGTG
GAGCGGTAGATATCATTGTCATTGACTCGGTGGCAGCACTTGTTCCTAAAGCTGAAATAGAAGGCGAAATGGGAGATTCC
CATATGGGTCTTCAAGCCCGGATGATGTCTCAGGCACTTAGAAAACTGTCTGGTGCCATTAATAAATCAAATACCATTGC
CATTTTCATTAACCAAGTACGTGAAAAAATAGGTGTTATGTTTGGAAATCCAGAAACGACTCCGGGAGGCCGGGCATTGA
AGTTCTATTCAACAGTTCGTCTGGAAGTGCGTCGTGCGGAACAATTAAAACAAGGTAATGAAATCGTTGGTAATAAAACC
AAAATCAAAGTTGTAAAAAACAAAGTTGCTCCACCATTCCGTCAAGCAGAAGTTGACATCATGTATGGTCAAGGGATTTC
CCAGGAAGGTGAAATCATCGATATGGGTGCAGATCTTGATATCGTCCTTAAAAGCGGATCGTGGTACTCATACAATGAAG
AGCGTGTCGGACAAGGCCGCGAAAATGCGAAGCTGTTCTTGAAAGAAAATCAGGATATCGCTCTGGAAATTTCTCGGAAA
ATCAGAGATCACTATAATCTTGATGGAGAGCATGAATTACCACCAGAAGAAAATGAAACAGAAGAGCATTTTGAATTACT
TGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.28

94.253

0.813
  recA Latilactobacillus sakei subsp. sakei 23K

72.861

97.414

0.71
  recA Streptococcus mutans UA159

65.23

100

0.652
  recA Streptococcus mitis SK321

65.698

98.851

0.649
  recA Streptococcus mitis NCTC 12261

67.463

96.264

0.649
  recA Streptococcus pneumoniae Rx1

67.463

96.264

0.649
  recA Streptococcus pneumoniae D39

67.463

96.264

0.649
  recA Streptococcus pneumoniae R6

67.463

96.264

0.649
  recA Streptococcus pneumoniae TIGR4

67.463

96.264

0.649
  recA Streptococcus pyogenes NZ131

67.584

93.966

0.635
  recA Lactococcus lactis subsp. cremoris KW2

64.881

96.552

0.626
  recA Ralstonia pseudosolanacearum GMI1000

68.69

89.943

0.618
  recA Vibrio cholerae strain A1552

66.355

92.241

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.355

92.241

0.612
  recA Neisseria gonorrhoeae MS11

66.044

92.241

0.609
  recA Neisseria gonorrhoeae MS11

66.044

92.241

0.609
  recA Neisseria gonorrhoeae strain FA1090

66.044

92.241

0.609
  recA Acinetobacter baumannii D1279779

61.628

98.851

0.609
  recA Acinetobacter baylyi ADP1

60.983

99.425

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.415

94.253

0.598
  recA Helicobacter pylori strain NCTC11637

60.465

98.851

0.598
  recA Helicobacter pylori 26695

60.465

98.851

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

93.966

0.589
  recA Pseudomonas stutzeri DSM 10701

63.438

91.954

0.583
  recA Glaesserella parasuis strain SC1401

63.438

91.954

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.562

91.954

0.566

Multiple sequence alignment