Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACDZ29_RS19315 Genome accession   NZ_CP168135
Coordinates   3844485..3845717 (+) Length   410 a.a.
NCBI ID   WP_375091170.1    Uniprot ID   -
Organism   Peribacillus sp. RS7     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3839485..3850717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDZ29_RS19290 (ACDZ29_19125) ymfI 3840704..3841429 (+) 726 WP_289324433.1 elongation factor P 5-aminopentanone reductase -
  ACDZ29_RS19295 (ACDZ29_19130) - 3841510..3841767 (+) 258 WP_289324434.1 DUF3243 domain-containing protein -
  ACDZ29_RS19300 (ACDZ29_19135) - 3842007..3842798 (+) 792 WP_289324435.1 DUF3388 domain-containing protein -
  ACDZ29_RS19305 (ACDZ29_19140) - 3842807..3843715 (+) 909 WP_353957901.1 RodZ family helix-turn-helix domain-containing protein -
  ACDZ29_RS19310 (ACDZ29_19145) pgsA 3843878..3844462 (+) 585 WP_034313524.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACDZ29_RS19315 (ACDZ29_19150) cinA 3844485..3845717 (+) 1233 WP_375091170.1 competence/damage-inducible protein A Machinery gene
  ACDZ29_RS19320 (ACDZ29_19155) recA 3846065..3847111 (+) 1047 WP_375088367.1 recombinase RecA Machinery gene
  ACDZ29_RS19325 (ACDZ29_19160) rny 3847462..3849021 (+) 1560 WP_289317097.1 ribonuclease Y -
  ACDZ29_RS19330 (ACDZ29_19165) - 3849175..3849972 (+) 798 WP_375088368.1 TIGR00282 family metallophosphoesterase -
  ACDZ29_RS19335 (ACDZ29_19170) spoVS 3850147..3850407 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44956.15 Da        Isoelectric Point: 5.0393

>NTDB_id=1042485 ACDZ29_RS19315 WP_375091170.1 3844485..3845717(+) (cinA) [Peribacillus sp. RS7]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFQKRERTMTENNKKQALVLEGSEVLANDHGMAPGMVLSKSGITYMLLPGPPSEMEPMF
LSYGYESIMNKLEKHERIDSKVLRFYGIGEAELETVIEDLLVNQTNPTIAPLAAEGEVTLRITAKDSSKEKCDELILEAE
KEILSRVGKFYYGSDNTSLIKELVKELTVRKLSIAAAESLTGGMFQEQLTTIPGAGKVFKGGIVSYTNDAKSNVLGVSDN
TISEHGVVSGECAMEMASNVRKKLDADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGNTHFKELNLSGSRAQNRIRSVK
YGCHYLLRDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1042485 ACDZ29_RS19315 WP_375091170.1 3844485..3845717(+) (cinA) [Peribacillus sp. RS7]
ATGGATGCAGAAATCATTGCAGTGGGCTCAGAGCTTCTTTTAGGACAAATCAATAACACTAATGGAAGATTCTTATCGCA
GCAGTTTGCGGAAATGGGGATCAATGTTTTTTACCATACTGTGGTTGGGGATAACGACCGGCGATTGCAACAAGCTATAG
AAATCGCTGAATCAAGGGCGAACTTGATTGTCTTTACCGGTGGACTCGGTCCTACCAAAGATGATTTAACGAAGGAAACG
ATTGCTCGCCATATAGGGAAAAAGCTGGTTTTTAATGATGAAGCTTTGCAATCCATTGAAGCTTACTTCCAAAAACGGGA
ACGGACCATGACGGAAAACAACAAAAAGCAGGCCCTTGTCTTAGAAGGCAGTGAAGTGTTGGCAAACGATCATGGCATGG
CACCGGGAATGGTCTTGTCCAAATCCGGGATTACATATATGCTCCTGCCTGGGCCGCCAAGTGAAATGGAGCCGATGTTT
TTAAGTTATGGTTATGAATCGATCATGAATAAATTGGAAAAGCATGAACGGATCGATTCCAAGGTTCTTCGGTTTTACGG
GATAGGTGAAGCCGAACTGGAAACGGTGATTGAAGATCTCCTTGTCAATCAAACGAATCCGACAATTGCTCCGTTGGCAG
CCGAAGGGGAAGTGACGTTAAGGATCACCGCTAAAGACTCTTCTAAAGAAAAATGCGATGAGCTTATTTTAGAAGCGGAA
AAAGAAATTCTTAGCAGGGTAGGTAAGTTCTATTATGGAAGTGATAATACTTCGCTAATAAAGGAACTTGTAAAAGAATT
GACGGTCCGCAAGCTTTCGATCGCGGCAGCCGAAAGTTTGACCGGAGGGATGTTCCAAGAACAGCTGACAACCATCCCAG
GCGCCGGTAAAGTCTTCAAAGGCGGTATTGTCAGCTATACGAATGATGCGAAGTCGAATGTCCTCGGCGTCAGTGATAAT
ACCATCTCCGAGCATGGGGTGGTCAGCGGTGAGTGTGCAATGGAAATGGCCTCTAATGTCCGGAAAAAGCTCGATGCGGA
TGTAGGCATAAGCTTTACGGGTGTCGCAGGGCCGGATGAACAAGAAGGCAAGCCTGTAGGGACAGTATTTATCGGCATTT
CATATCGGGATGGAAACACTCATTTCAAAGAGTTGAACCTTTCCGGAAGCAGGGCGCAGAACCGTATTCGCAGTGTGAAG
TACGGATGTCATTACCTATTAAGGGATTTATGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.578

99.512

0.583
  cinA Streptococcus pneumoniae TIGR4

45.238

100

0.463
  cinA Streptococcus pneumoniae Rx1

44.762

100

0.459
  cinA Streptococcus mitis SK321

44.762

100

0.459
  cinA Streptococcus pneumoniae R6

44.762

100

0.459
  cinA Streptococcus pneumoniae D39

44.524

100

0.456
  cinA Streptococcus mitis NCTC 12261

44.524

100

0.456
  cinA Streptococcus mutans UA159

43.812

98.537

0.432
  cinA Streptococcus suis isolate S10

39.599

97.317

0.385

Multiple sequence alignment