Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB9L17_RS06040 Genome accession   NZ_CP168124
Coordinates   1243454..1244521 (+) Length   355 a.a.
NCBI ID   WP_068983091.1    Uniprot ID   -
Organism   Bacillus sp. RS11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1238454..1249521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L17_RS06015 (AB9L17_06015) - 1239182..1239439 (+) 258 WP_068983095.1 DUF3243 domain-containing protein -
  AB9L17_RS06020 (AB9L17_06020) - 1239668..1240450 (+) 783 WP_068983492.1 DUF3388 domain-containing protein -
  AB9L17_RS06025 (AB9L17_06025) - 1240483..1241388 (+) 906 WP_068983094.1 RodZ family helix-turn-helix domain-containing protein -
  AB9L17_RS06030 (AB9L17_06030) pgsA 1241439..1242017 (+) 579 WP_375200203.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB9L17_RS06035 (AB9L17_06035) cinA 1242035..1243294 (+) 1260 WP_223552633.1 competence/damage-inducible protein A Machinery gene
  AB9L17_RS06040 (AB9L17_06040) recA 1243454..1244521 (+) 1068 WP_068983091.1 recombinase RecA Machinery gene
  AB9L17_RS06045 (AB9L17_06045) rny 1244932..1246491 (+) 1560 WP_068983090.1 ribonuclease Y -
  AB9L17_RS06050 (AB9L17_06050) - 1246732..1246854 (+) 123 WP_375200204.1 hypothetical protein -
  AB9L17_RS06055 (AB9L17_06055) - 1247012..1247782 (+) 771 WP_068983089.1 tyrosine-protein phosphatase -
  AB9L17_RS06060 (AB9L17_06060) - 1248112..1248948 (+) 837 WP_375200205.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38337.53 Da        Isoelectric Point: 4.7426

>NTDB_id=1042411 AB9L17_RS06040 WP_068983091.1 1243454..1244521(+) (recA) [Bacillus sp. RS11]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGSINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIMGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENTAVLEDIANK
IRASYGMASASYTIAAHDEEEEMDEELQLLLEDEK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1042411 AB9L17_RS06040 WP_068983091.1 1243454..1244521(+) (recA) [Bacillus sp. RS11]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCGTTAAAACAAATTGAAAAGAACTTTGGTAAAGGTTCTATCATGAAACT
TGGTGAAAAGACAGATTTAGAAATCGCTACATCTTCAAGTGGTTCGTTAGCACTTGATGCTGCATTAGGTGTTGGCGGTT
ATCCACGTGGACGTATTATTGAAGTATATGGCCCTGAATCATCAGGTAAAACAACGGTTGCTCTTCATGCCATTGCAGAG
GTACAAGCAAAGGGCGGACAAGCAGCATTTATCGATGCCGAGCATGCACTAGATCCAATTTACGCACAAAAATTAGGTGT
CAATATTGATGAATTATTATTATCACAACCAGATACAGGAGAACAAGCACTTGAAATTGCAGAAGCTTTAGTACGTAGTG
GTGCTATTGATATCATCGTCATTGACTCCGTGGCAGCTTTAGTTCCAAAAGCTGAAATTGAAGGAGATATGGGTGACTCT
CATGTCGGACTACAAGCTCGTTTAATGTCTCAAGCATTACGTAAGCTTTCAGGTTCTATTAATAAATCAAAAACAATTGC
CATTTTCATCAACCAAATACGTGAAAAAATTGGTGTTATGTTTGGTAATCCAGAAACAACACCTGGTGGTCGCGCGCTTA
AATTCTACAGCTCTGTTCGATTAGAAGTGCGTCGTGCGGAAGCTATTAAACAAGGCAATGACATAATGGGTAACCGTACA
AAAATTAAAATTGTGAAAAACAAAGTAGCACCACCGTTCCGTACAGCTGAAGTTGATATTATGTACGGTGAAGGCATTTC
AAAAGAGGGCGAAACTGTCGATTTAGGTGTTGAATTAGACATCGTTCAAAAAAGTGGGTCTTGGTATGCTTACGGTGATG
AGCGCCTTGGTCAAGGTCGTGAAAATGCCAAGCAGTATTTAAAAGAAAATACAGCAGTCCTTGAAGATATCGCGAATAAA
ATCCGTGCTTCTTATGGCATGGCATCTGCTTCTTACACAATTGCTGCGCATGATGAAGAGGAAGAAATGGACGAAGAGTT
ACAACTTCTACTTGAAGACGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.544

92.113

0.797
  recA Latilactobacillus sakei subsp. sakei 23K

71.51

98.873

0.707
  recA Streptococcus pneumoniae TIGR4

64.384

100

0.662
  recA Streptococcus pneumoniae Rx1

64.384

100

0.662
  recA Streptococcus pneumoniae D39

64.384

100

0.662
  recA Streptococcus pneumoniae R6

64.384

100

0.662
  recA Streptococcus mitis SK321

63.989

100

0.651
  recA Streptococcus mitis NCTC 12261

63.712

100

0.648
  recA Streptococcus mutans UA159

63.611

100

0.645
  recA Streptococcus pyogenes NZ131

63.944

100

0.639
  recA Lactococcus lactis subsp. cremoris KW2

66.667

92.958

0.62
  recA Neisseria gonorrhoeae strain FA1090

65.35

92.676

0.606
  recA Neisseria gonorrhoeae MS11

65.35

92.676

0.606
  recA Neisseria gonorrhoeae MS11

65.35

92.676

0.606
  recA Acinetobacter baylyi ADP1

62.099

96.62

0.6
  recA Glaesserella parasuis strain SC1401

60.114

98.873

0.594
  recA Helicobacter pylori strain NCTC11637

64.615

91.549

0.592
  recA Helicobacter pylori 26695

64.308

91.549

0.589
  recA Ralstonia pseudosolanacearum GMI1000

63.415

92.394

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.497

91.831

0.583
  recA Acinetobacter baumannii D1279779

60.767

95.493

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

91.831

0.58
  recA Vibrio cholerae strain A1552

63.438

90.141

0.572
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.438

90.141

0.572
  recA Pseudomonas stutzeri DSM 10701

61.702

92.676

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

90.986

0.566

Multiple sequence alignment