Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB9L17_RS06035 Genome accession   NZ_CP168124
Coordinates   1242035..1243294 (+) Length   419 a.a.
NCBI ID   WP_223552633.1    Uniprot ID   -
Organism   Bacillus sp. RS11     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1237035..1248294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L17_RS06005 (AB9L17_06005) yfmH 1237111..1238412 (+) 1302 WP_375200201.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AB9L17_RS06010 (AB9L17_06010) ymfI 1238409..1239137 (+) 729 WP_375200202.1 elongation factor P 5-aminopentanone reductase -
  AB9L17_RS06015 (AB9L17_06015) - 1239182..1239439 (+) 258 WP_068983095.1 DUF3243 domain-containing protein -
  AB9L17_RS06020 (AB9L17_06020) - 1239668..1240450 (+) 783 WP_068983492.1 DUF3388 domain-containing protein -
  AB9L17_RS06025 (AB9L17_06025) - 1240483..1241388 (+) 906 WP_068983094.1 RodZ family helix-turn-helix domain-containing protein -
  AB9L17_RS06030 (AB9L17_06030) pgsA 1241439..1242017 (+) 579 WP_375200203.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB9L17_RS06035 (AB9L17_06035) cinA 1242035..1243294 (+) 1260 WP_223552633.1 competence/damage-inducible protein A Machinery gene
  AB9L17_RS06040 (AB9L17_06040) recA 1243454..1244521 (+) 1068 WP_068983091.1 recombinase RecA Machinery gene
  AB9L17_RS06045 (AB9L17_06045) rny 1244932..1246491 (+) 1560 WP_068983090.1 ribonuclease Y -
  AB9L17_RS06050 (AB9L17_06050) - 1246732..1246854 (+) 123 WP_375200204.1 hypothetical protein -
  AB9L17_RS06055 (AB9L17_06055) - 1247012..1247782 (+) 771 WP_068983089.1 tyrosine-protein phosphatase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45244.68 Da        Isoelectric Point: 4.9113

>NTDB_id=1042410 AB9L17_RS06035 WP_223552633.1 1242035..1243294(+) (cinA) [Bacillus sp. RS11]
MNAEILAVGSELLLGQITNTNARFISNQLSELGINVYYHTVVGDNAQRLEKAIAVAETRADLIIVSGGLGPTKDDLTKET
IARHLGVSLEFDEIALTYIEQFFAKRGRPMTENNRKQALILAGSEVLANHHGMAPGMILTKDEHTYILLPGPPKELEPMF
QFEAKPKLSVMLNTGGVIASHVMRFYGIGEAELEVRVQDILDSQTNPTVAPLASDGEVTLRVTAKTETEQEAQQLIAAKV
AEIQALVGDYQYGSDDDSLASKTVEMLLDNKLTIAAAESLTAGLFQSELAEIPGVGDALVGGVVTYTEGAKIKQLGISKE
LLDSHGIVSSECAAAMASTVRKKFGTDIGIGLTGAAGPTAHDHQPVGTVWIGIAIGDEEPITYLLHLSGMRNTNRLRTVK
FTCHYLMQLLEERGFTKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1042410 AB9L17_RS06035 WP_223552633.1 1242035..1243294(+) (cinA) [Bacillus sp. RS11]
ATGAATGCTGAAATTCTTGCAGTTGGCTCAGAGTTATTGCTTGGTCAAATTACGAATACAAATGCGAGGTTTATTTCTAA
CCAGTTGTCTGAGTTAGGGATAAATGTGTATTATCACACTGTTGTAGGGGATAATGCGCAACGTTTAGAAAAGGCTATTG
CTGTTGCAGAGACTCGTGCTGATTTAATCATTGTTTCTGGTGGGCTTGGTCCTACAAAGGATGATTTAACAAAGGAAACG
ATTGCTCGTCATCTTGGCGTTTCACTCGAATTTGATGAGATCGCACTGACGTATATTGAGCAATTTTTTGCAAAACGAGG
ACGTCCAATGACGGAAAATAATCGTAAGCAGGCTTTAATACTAGCAGGTAGTGAGGTCCTTGCCAACCATCACGGTATGG
CACCTGGCATGATACTAACAAAAGATGAGCATACGTATATTTTGCTTCCAGGACCACCCAAAGAACTTGAGCCGATGTTC
CAGTTTGAGGCAAAGCCGAAGCTTAGTGTGATGTTAAATACTGGAGGGGTTATTGCATCTCACGTTATGCGCTTTTATGG
AATCGGTGAAGCAGAACTCGAAGTACGTGTCCAAGATATTTTAGATTCACAAACAAACCCAACTGTTGCTCCACTTGCTT
CTGACGGCGAGGTTACATTACGTGTAACTGCCAAGACAGAAACGGAACAAGAAGCGCAGCAGCTTATTGCCGCAAAGGTG
GCAGAGATTCAAGCGCTTGTTGGTGACTATCAATACGGCAGCGATGATGATTCTCTTGCCTCTAAAACAGTAGAAATGTT
ACTAGATAATAAGTTAACAATTGCTGCGGCAGAAAGTTTAACAGCAGGGTTATTTCAGTCAGAGCTTGCTGAGATACCAG
GTGTAGGGGATGCCCTTGTCGGTGGCGTTGTTACGTATACAGAAGGGGCTAAAATTAAGCAGCTCGGTATTTCTAAAGAA
TTATTAGATTCACATGGGATTGTAAGCAGTGAATGTGCAGCGGCCATGGCTAGTACAGTACGTAAAAAATTTGGTACGGA
TATAGGTATTGGATTAACAGGTGCGGCAGGTCCTACGGCGCATGATCATCAACCAGTAGGGACGGTTTGGATTGGTATTG
CAATTGGTGATGAAGAGCCAATTACGTATTTACTTCATTTATCGGGCATGCGTAATACAAATCGACTGCGTACGGTGAAG
TTTACATGTCATTATTTAATGCAACTTTTGGAAGAAAGAGGCTTTACAAAACGCTACTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.942

98.329

0.511
  cinA Streptococcus mitis SK321

46.234

91.885

0.425
  cinA Streptococcus pneumoniae Rx1

46.214

91.408

0.422
  cinA Streptococcus pneumoniae TIGR4

46.214

91.408

0.422
  cinA Streptococcus pneumoniae R6

46.214

91.408

0.422
  cinA Streptococcus pneumoniae D39

45.953

91.408

0.42
  cinA Streptococcus mitis NCTC 12261

45.455

91.885

0.418
  cinA Streptococcus mutans UA159

45.91

90.453

0.415
  cinA Streptococcus suis isolate S10

40.106

90.453

0.363

Multiple sequence alignment