Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J6K54_RS16755 Genome accession   NZ_CP168075
Coordinates   3628934..3629992 (-) Length   352 a.a.
NCBI ID   WP_018670909.1    Uniprot ID   -
Organism   Brevibacillus laterosporus strain SN19-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3623934..3634992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6K54_RS16735 (J6K54_16735) spoVS 3624957..3625217 (-) 261 WP_003337012.1 stage V sporulation protein SpoVS -
  J6K54_RS16740 (J6K54_16740) - 3625333..3626127 (-) 795 WP_018670912.1 TIGR00282 family metallophosphoesterase -
  J6K54_RS16745 (J6K54_16745) rny 3626279..3627829 (-) 1551 WP_018670911.1 ribonuclease Y -
  J6K54_RS16750 (J6K54_16750) - 3628190..3628852 (-) 663 WP_018670910.1 RecX family transcriptional regulator -
  J6K54_RS16755 (J6K54_16755) recA 3628934..3629992 (-) 1059 WP_018670909.1 recombinase RecA Machinery gene
  J6K54_RS16760 (J6K54_16760) - 3630166..3631755 (-) 1590 WP_104065109.1 DEAD/DEAH box helicase -
  J6K54_RS16765 (J6K54_16765) cinA 3631772..3633016 (-) 1245 WP_168420291.1 competence/damage-inducible protein A Machinery gene
  J6K54_RS16770 (J6K54_16770) pgsA 3633036..3633611 (-) 576 WP_018670906.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J6K54_RS16775 (J6K54_16775) rimO 3633612..3634955 (-) 1344 WP_018670905.1 30S ribosomal protein S12 methylthiotransferase RimO -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37840.15 Da        Isoelectric Point: 4.9005

>NTDB_id=1041920 J6K54_RS16755 WP_018670909.1 3628934..3629992(-) (recA) [Brevibacillus laterosporus strain SN19-1]
MSDRRAALESALRQIEKQFGKGSIMKMGEMAHSQVSTVSTGALALDIALGVGGFPRGRIIEIYGPESSGKTTVALHAIAE
VQKQGGQAAFIDAEHALDPVYAAKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTITIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAEGIKQGNDVVGTKT
KIKVVKNKVAPPFKVAEVDIMYGEGISREGSILDIGAELDIVAKSGAWYAFNDERLGQGRENAKQFLKENPAIAAQIDQK
IREYYSLNPNSIPEGEAVLDPEQEEEPTFDLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1041920 J6K54_RS16755 WP_018670909.1 3628934..3629992(-) (recA) [Brevibacillus laterosporus strain SN19-1]
TTGTCAGATCGTCGCGCTGCGCTAGAGAGTGCTTTAAGACAAATAGAAAAACAGTTCGGGAAAGGCTCCATCATGAAGAT
GGGGGAAATGGCACATTCACAGGTTTCTACTGTTTCAACAGGAGCCTTAGCTCTTGATATCGCACTTGGTGTCGGCGGTT
TCCCACGTGGTCGTATTATTGAGATTTATGGACCAGAATCCTCTGGTAAAACGACGGTTGCGCTTCATGCCATTGCAGAG
GTACAGAAGCAAGGTGGACAAGCAGCCTTTATTGATGCAGAGCATGCCTTAGACCCTGTTTATGCTGCTAAATTGGGTGT
TAACATAGAAGAATTACTTTTATCCCAACCAGATACAGGAGAACAAGCATTAGAAATTGCGGAAGCTCTCGTACGCTCTG
GCGCTGTAGATATTATCGTAGTAGACTCCGTAGCGGCTTTGGTTCCAAAAGCTGAGATTGAAGGAGAAATGGGAGACTCT
CACGTTGGTCTACAAGCTCGTTTGATGTCTCAAGCTTTACGTAAGCTTTCTGGAGCTATCAACAAATCCAAAACGATTAC
GATCTTCATTAACCAGTTGCGTGAAAAAGTGGGTGTTATGTTTGGTAACCCAGAAACTACTCCTGGTGGACGAGCTTTGA
AGTTCTATGCTAGTGTACGTCTAGATGTACGTAAAGCAGAGGGTATTAAACAAGGCAATGATGTAGTAGGTACGAAGACT
AAAATTAAAGTTGTAAAAAATAAAGTGGCTCCTCCGTTTAAAGTAGCCGAAGTAGATATTATGTATGGAGAAGGTATTTC
TAGAGAAGGAAGTATTCTGGATATTGGAGCTGAGCTGGACATTGTTGCAAAAAGCGGTGCTTGGTATGCATTTAATGATG
AACGATTAGGTCAAGGTCGTGAAAATGCAAAACAGTTCTTGAAAGAGAACCCAGCTATTGCGGCTCAGATTGACCAAAAA
ATTCGAGAATATTACAGCCTGAATCCTAATTCCATCCCAGAGGGAGAAGCGGTTCTCGATCCAGAGCAGGAGGAAGAACC
AACTTTTGATTTAGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.53

94.318

0.778
  recA Latilactobacillus sakei subsp. sakei 23K

71.988

94.318

0.679
  recA Streptococcus mitis NCTC 12261

66.572

100

0.668
  recA Streptococcus pyogenes NZ131

66.102

100

0.665
  recA Streptococcus pneumoniae TIGR4

70

93.75

0.656
  recA Streptococcus pneumoniae Rx1

70

93.75

0.656
  recA Streptococcus mitis SK321

70

93.75

0.656
  recA Streptococcus pneumoniae D39

70

93.75

0.656
  recA Streptococcus pneumoniae R6

70

93.75

0.656
  recA Lactococcus lactis subsp. cremoris KW2

68.563

94.886

0.651
  recA Streptococcus mutans UA159

68.997

93.466

0.645
  recA Neisseria gonorrhoeae MS11

63.584

98.295

0.625
  recA Neisseria gonorrhoeae MS11

63.584

98.295

0.625
  recA Neisseria gonorrhoeae strain FA1090

63.584

98.295

0.625
  recA Vibrio cholerae strain A1552

65.455

93.75

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.455

93.75

0.614
  recA Ralstonia pseudosolanacearum GMI1000

67.937

89.489

0.608
  recA Acinetobacter baumannii D1279779

60

99.432

0.597
  recA Glaesserella parasuis strain SC1401

62.874

94.886

0.597
  recA Pseudomonas stutzeri DSM 10701

61.224

97.443

0.597
  recA Acinetobacter baylyi ADP1

59.143

99.432

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.174

91.193

0.585
  recA Helicobacter pylori strain NCTC11637

61.446

94.318

0.58
  recA Helicobacter pylori 26695

61.446

94.318

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

92.898

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.422

91.477

0.571

Multiple sequence alignment