Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   J6K54_RS16765 Genome accession   NZ_CP168075
Coordinates   3631772..3633016 (-) Length   414 a.a.
NCBI ID   WP_168420291.1    Uniprot ID   -
Organism   Brevibacillus laterosporus strain SN19-1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3626772..3638016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6K54_RS16750 (J6K54_16750) - 3628190..3628852 (-) 663 WP_018670910.1 RecX family transcriptional regulator -
  J6K54_RS16755 (J6K54_16755) recA 3628934..3629992 (-) 1059 WP_018670909.1 recombinase RecA Machinery gene
  J6K54_RS16760 (J6K54_16760) - 3630166..3631755 (-) 1590 WP_104065109.1 DEAD/DEAH box helicase -
  J6K54_RS16765 (J6K54_16765) cinA 3631772..3633016 (-) 1245 WP_168420291.1 competence/damage-inducible protein A Machinery gene
  J6K54_RS16770 (J6K54_16770) pgsA 3633036..3633611 (-) 576 WP_018670906.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J6K54_RS16775 (J6K54_16775) rimO 3633612..3634955 (-) 1344 WP_018670905.1 30S ribosomal protein S12 methylthiotransferase RimO -
  J6K54_RS16780 (J6K54_16780) - 3635198..3636118 (-) 921 WP_018670904.1 RodZ domain-containing protein -
  J6K54_RS16785 (J6K54_16785) - 3636131..3636922 (-) 792 WP_018670903.1 DUF3388 domain-containing protein -
  J6K54_RS16790 (J6K54_16790) - 3637258..3637515 (-) 258 WP_018670902.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45461.93 Da        Isoelectric Point: 5.1705

>NTDB_id=1041921 J6K54_RS16765 WP_168420291.1 3631772..3633016(-) (cinA) [Brevibacillus laterosporus strain SN19-1]
MKAEIIAVGTELLLGQIANTNAQYLSQKLAEVGINVYYHITVGDNYERMLQVIERAKSRSDLIIFTGGLGPTQDDLTKGV
VADHLGHKLVTDGKAMANIRDFFERRGIDMTDNNRKQALVIEGSTVFDNDHGMAPGMGITQEGVTYVLLPGPPSEMYPMV
ENYLMPFLASLGNEHQIFHSRVFRFFGIGESLLEAKLIDLIEGQSNPTIAPYAKEFEVTLRITARATSVEEAESLLLPVE
EEIRNRVGEFIYAVGESPLHQVLYEQLLLKQQTISFAESCTGGTVSQLLTSVPGASQVYRGGIVCYSNEMKHQWLDVPLD
VLETEGAVSETTARLLAENIRQKMGTTYGVSVTGVAGPESSEGKPVGLVYIGIASEKQPTLVKKVQVAGQRRAIIGRVAK
YALYHTLQQLHCND

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=1041921 J6K54_RS16765 WP_168420291.1 3631772..3633016(-) (cinA) [Brevibacillus laterosporus strain SN19-1]
ATGAAAGCGGAAATTATCGCGGTTGGAACTGAGTTATTACTTGGACAAATTGCTAATACAAACGCACAATACTTATCGCA
AAAGTTAGCTGAAGTAGGAATTAATGTTTATTATCACATAACAGTTGGCGATAATTATGAACGAATGCTACAAGTGATAG
AACGTGCGAAATCGCGTTCCGATCTCATCATTTTTACCGGAGGGTTGGGCCCTACGCAGGATGATTTGACCAAAGGCGTA
GTGGCCGACCATCTTGGTCACAAGCTGGTCACGGATGGAAAAGCAATGGCGAACATTCGTGATTTTTTTGAGCGACGCGG
TATTGACATGACAGACAACAATCGTAAGCAAGCCCTTGTAATTGAGGGATCGACGGTCTTTGACAATGATCACGGAATGG
CACCAGGAATGGGGATTACCCAAGAGGGCGTAACGTATGTCTTGTTGCCTGGTCCCCCAAGCGAAATGTATCCGATGGTG
GAAAATTATTTGATGCCATTTTTGGCTTCTTTAGGGAATGAGCATCAAATCTTTCATTCTCGTGTCTTTCGCTTTTTTGG
TATCGGAGAATCTTTGTTAGAAGCAAAGCTGATTGACTTAATTGAAGGGCAATCCAACCCGACAATTGCCCCATATGCCA
AGGAGTTTGAGGTGACGTTGCGCATAACGGCTCGCGCTACTTCTGTGGAGGAAGCCGAGAGTTTGTTACTTCCTGTCGAA
GAAGAGATTCGCAATCGCGTAGGTGAGTTTATATATGCAGTAGGGGAATCTCCGTTGCATCAGGTACTCTATGAGCAACT
GCTATTAAAACAGCAGACGATCTCTTTTGCTGAAAGCTGTACAGGGGGCACTGTTTCACAACTGCTTACCTCGGTTCCTG
GCGCGTCGCAAGTATATCGAGGGGGTATTGTTTGTTATTCTAACGAAATGAAACATCAATGGCTGGATGTGCCTCTTGAC
GTCCTAGAGACAGAAGGAGCTGTCAGTGAAACAACGGCTCGGCTTTTAGCTGAGAATATTCGCCAAAAGATGGGCACAAC
CTATGGCGTTTCTGTTACCGGTGTAGCAGGACCTGAATCTTCCGAGGGAAAACCTGTAGGACTGGTCTATATCGGAATCG
CCAGTGAGAAGCAGCCTACTTTGGTAAAAAAGGTGCAGGTTGCGGGACAGCGCAGAGCTATAATTGGACGTGTTGCCAAG
TATGCTCTATATCACACCCTCCAGCAGCTGCACTGTAATGACTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.463

99.034

0.51
  cinA Streptococcus mitis NCTC 12261

47.045

100

0.481
  cinA Streptococcus mitis SK321

46.809

100

0.478
  cinA Streptococcus pneumoniae TIGR4

46.572

100

0.476
  cinA Streptococcus pneumoniae Rx1

46.336

100

0.473
  cinA Streptococcus pneumoniae R6

46.336

100

0.473
  cinA Streptococcus pneumoniae D39

46.099

100

0.471
  cinA Streptococcus mutans UA159

46.005

99.758

0.459
  cinA Streptococcus suis isolate S10

43.799

91.546

0.401

Multiple sequence alignment