Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACB089_RS18825 Genome accession   NZ_CP167122
Coordinates   3684243..3685310 (-) Length   355 a.a.
NCBI ID   WP_368635400.1    Uniprot ID   -
Organism   Lysinibacillus sp. RS10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3679243..3690310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB089_RS18810 (ACB089_18800) - 3679962..3680798 (-) 837 WP_374963443.1 O-antigen ligase family protein -
  ACB089_RS18815 (ACB089_18805) - 3681128..3681898 (-) 771 WP_374963445.1 tyrosine-protein phosphatase -
  ACB089_RS18820 (ACB089_18810) rny 3682274..3683833 (-) 1560 WP_368635399.1 ribonuclease Y -
  ACB089_RS18825 (ACB089_18815) recA 3684243..3685310 (-) 1068 WP_368635400.1 recombinase RecA Machinery gene
  ACB089_RS18830 (ACB089_18820) cinA 3685701..3686957 (-) 1257 WP_374963448.1 competence/damage-inducible protein A Machinery gene
  ACB089_RS18835 (ACB089_18825) pgsA 3686975..3687553 (-) 579 WP_068983093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACB089_RS18840 (ACB089_18830) - 3687604..3688509 (-) 906 WP_374963450.1 helix-turn-helix domain-containing protein -
  ACB089_RS18845 (ACB089_18835) - 3688542..3689324 (-) 783 WP_068983492.1 DUF3388 domain-containing protein -
  ACB089_RS18850 (ACB089_18840) - 3689552..3689809 (-) 258 WP_068983095.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38279.41 Da        Isoelectric Point: 4.6809

>NTDB_id=1038342 ACB089_RS18825 WP_368635400.1 3684243..3685310(-) (recA) [Lysinibacillus sp. RS10]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQANGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIMGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENTAVLDDIANK
IRASYGMASASYTIAAHDEDEEMDEELQLLLEDEK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1038342 ACB089_RS18825 WP_368635400.1 3684243..3685310(-) (recA) [Lysinibacillus sp. RS10]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCGTTAAAACAAATTGAAAAGAACTTTGGTAAAGGTTCTATCATGAAACT
TGGTGAAAAGACGGATTTAGAAATCGCTACATCTTCAAGTGGTTCGTTAGCACTTGATGCTGCATTAGGTGTTGGCGGTT
ATCCACGTGGACGTATTATTGAAGTATATGGCCCTGAATCATCAGGTAAAACAACGGTTGCTCTTCATGCCATTGCAGAG
GTACAAGCGAATGGTGGACAAGCAGCATTTATCGATGCCGAGCATGCACTAGATCCAATTTACGCACAAAAATTAGGTGT
CAATATTGATGAATTATTATTATCACAACCAGATACAGGAGAGCAAGCACTTGAAATTGCAGAAGCTTTAGTACGTAGTG
GTGCTATCGATATTATCGTCATTGACTCCGTTGCAGCTTTAGTTCCAAAAGCTGAAATTGAAGGAGATATGGGTGACTCT
CATGTCGGACTACAAGCTCGTTTAATGTCTCAAGCATTACGTAAGCTTTCAGGTGCTATTAATAAATCAAAAACAATTGC
TATTTTCATCAACCAAATACGTGAAAAAATTGGTGTTATGTTTGGTAATCCAGAAACAACACCTGGTGGTCGCGCGCTTA
AATTCTACAGCTCTGTTCGATTAGAAGTGCGTCGTGCGGAAGCTATTAAACAAGGCAATGACATAATGGGTAACCGTACA
AAAATTAAAATTGTGAAAAACAAAGTAGCACCACCGTTCCGTACAGCTGAAGTTGATATTATGTACGGTGAAGGCATTTC
AAAAGAGGGCGAAACTGTCGATTTAGGTGTTGAATTAGACATCGTTCAAAAAAGTGGATCTTGGTATGCTTACGGTGATG
AGCGCCTTGGTCAAGGCCGTGAAAATGCCAAGCAGTATTTAAAAGAAAATACAGCAGTCCTTGATGATATCGCGAATAAA
ATCCGTGCTTCTTATGGCATGGCATCTGCTTCTTACACAATTGCTGCGCATGATGAAGATGAAGAAATGGACGAAGAGTT
ACAACTTCTACTTGAAGATGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.85

92.113

0.8
  recA Latilactobacillus sakei subsp. sakei 23K

71.795

98.873

0.71
  recA Streptococcus pneumoniae Rx1

64.11

100

0.659
  recA Streptococcus pneumoniae D39

64.11

100

0.659
  recA Streptococcus pneumoniae R6

64.11

100

0.659
  recA Streptococcus pneumoniae TIGR4

64.11

100

0.659
  recA Streptococcus mitis NCTC 12261

64.365

100

0.656
  recA Streptococcus mutans UA159

63.889

100

0.648
  recA Streptococcus mitis SK321

63.435

100

0.645
  recA Streptococcus pyogenes NZ131

63.944

100

0.639
  recA Lactococcus lactis subsp. cremoris KW2

66.97

92.958

0.623
  recA Neisseria gonorrhoeae strain FA1090

65.957

92.676

0.611
  recA Neisseria gonorrhoeae MS11

65.957

92.676

0.611
  recA Neisseria gonorrhoeae MS11

65.957

92.676

0.611
  recA Acinetobacter baylyi ADP1

62.099

96.62

0.6
  recA Helicobacter pylori strain NCTC11637

65.231

91.549

0.597
  recA Helicobacter pylori 26695

64.923

91.549

0.594
  recA Glaesserella parasuis strain SC1401

61.047

96.901

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.765

95.775

0.592
  recA Acinetobacter baumannii D1279779

59.714

98.592

0.589
  recA Ralstonia pseudosolanacearum GMI1000

63.11

92.394

0.583
  recA Pseudomonas stutzeri DSM 10701

60.651

95.211

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.883

91.831

0.577
  recA Vibrio cholerae strain A1552

63.438

90.141

0.572
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.438

90.141

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

90.986

0.566

Multiple sequence alignment