Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACB089_RS18830 Genome accession   NZ_CP167122
Coordinates   3685701..3686957 (-) Length   418 a.a.
NCBI ID   WP_374963448.1    Uniprot ID   -
Organism   Lysinibacillus sp. RS10     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3680701..3691957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB089_RS18815 (ACB089_18805) - 3681128..3681898 (-) 771 WP_374963445.1 tyrosine-protein phosphatase -
  ACB089_RS18820 (ACB089_18810) rny 3682274..3683833 (-) 1560 WP_368635399.1 ribonuclease Y -
  ACB089_RS18825 (ACB089_18815) recA 3684243..3685310 (-) 1068 WP_368635400.1 recombinase RecA Machinery gene
  ACB089_RS18830 (ACB089_18820) cinA 3685701..3686957 (-) 1257 WP_374963448.1 competence/damage-inducible protein A Machinery gene
  ACB089_RS18835 (ACB089_18825) pgsA 3686975..3687553 (-) 579 WP_068983093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACB089_RS18840 (ACB089_18830) - 3687604..3688509 (-) 906 WP_374963450.1 helix-turn-helix domain-containing protein -
  ACB089_RS18845 (ACB089_18835) - 3688542..3689324 (-) 783 WP_068983492.1 DUF3388 domain-containing protein -
  ACB089_RS18850 (ACB089_18840) - 3689552..3689809 (-) 258 WP_068983095.1 DUF3243 domain-containing protein -
  ACB089_RS18855 (ACB089_18845) ymfI 3689854..3690582 (-) 729 WP_374963453.1 elongation factor P 5-aminopentanone reductase -
  ACB089_RS18860 (ACB089_18850) yfmH 3690579..3691880 (-) 1302 WP_374963455.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45117.62 Da        Isoelectric Point: 5.0766

>NTDB_id=1038343 ACB089_RS18830 WP_374963448.1 3685701..3686957(-) (cinA) [Lysinibacillus sp. RS10]
MNAEILAVGSELLLGQITNTNARFISNQLSELGINVYYHTVVGDNAQRLEKAISVAETRADLIIFSGGLGPTKDDLTKET
IARHLGVSLEFDEIALTYIEQFFAKRGRPMTENNRKQALILAGSEVLANHHGMAPGMILTKDERTYILLPGPPKELEPMF
QFEAKPKLSVMLNTGGVIASHVMRFYGIGEAELEVRVQDILDSQTNPTVAPLASDGEVTLRVTAKTETEQEAQQLIAAKV
AEIQALVGDYQYGSDDDSLASKTVEMLLDNKLTIAAAESLTAGLFQSELAEIPGVGDALVGGVVTYTEGAKIKQLGISKE
LLDTHGIVSSECAAAMASTVRKKFGTDIGIGLTGAAGPTAHDHQPVGTVWIGIAIGDEEPITYLLHLSGMRNTNRLRAAK
FTCHYLMQLLVERGFKKR

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1038343 ACB089_RS18830 WP_374963448.1 3685701..3686957(-) (cinA) [Lysinibacillus sp. RS10]
ATGAATGCTGAAATTCTTGCAGTTGGCTCAGAGTTATTGCTTGGTCAGATTACGAATACAAATGCGAGGTTTATTTCTAA
CCAGTTGTCTGAGTTAGGGATAAATGTGTATTATCACACTGTTGTAGGGGATAATGCGCAACGTTTAGAAAAGGCTATTT
CTGTTGCAGAGACTCGTGCTGATTTAATCATTTTTTCTGGTGGGCTTGGTCCTACAAAGGATGATTTAACAAAGGAAACG
ATTGCTCGTCATCTTGGCGTTTCACTCGAATTTGATGAGATCGCACTGACGTATATTGAGCAATTTTTTGCAAAACGAGG
ACGTCCAATGACGGAAAATAATCGTAAACAGGCTTTAATTCTAGCAGGTAGTGAGGTGCTTGCAAACCATCACGGTATGG
CACCTGGCATGATACTAACAAAAGATGAGCGTACGTATATTTTGCTTCCAGGGCCACCCAAAGAACTTGAGCCGATGTTC
CAGTTTGAGGCAAAGCCAAAGCTTAGTGTGATGTTAAATACTGGAGGGGTAATTGCATCTCACGTTATGCGCTTTTATGG
AATTGGTGAGGCAGAGCTCGAAGTACGTGTCCAAGATATTTTAGATTCACAAACAAACCCAACTGTTGCTCCACTTGCTT
CTGATGGCGAGGTTACATTACGTGTAACTGCCAAGACAGAAACGGAGCAAGAAGCGCAGCAGCTTATTGCCGCAAAGGTG
GCAGAGATTCAAGCGCTTGTTGGTGACTATCAATACGGCAGTGATGATGATTCTCTTGCCTCTAAAACAGTTGAAATGTT
ACTAGATAATAAGTTAACAATTGCTGCGGCAGAGAGTTTAACAGCAGGGTTATTTCAGTCAGAGCTTGCTGAGATACCAG
GCGTAGGGGATGCCCTTGTCGGTGGCGTTGTTACGTATACAGAAGGGGCTAAAATTAAGCAGCTCGGTATTTCTAAAGAA
TTATTAGATACACATGGGATTGTAAGCAGTGAATGTGCAGCGGCCATGGCTAGTACAGTACGTAAAAAATTCGGTACGGA
TATAGGTATTGGATTAACAGGTGCGGCAGGTCCTACGGCGCATGATCATCAACCAGTAGGGACGGTTTGGATTGGTATTG
CAATTGGTGATGAAGAGCCAATTACGTATTTACTTCATTTATCGGGCATGCGCAATACAAATCGACTTCGCGCGGCGAAA
TTTACTTGTCATTATTTAATGCAGCTTTTAGTAGAAAGAGGCTTTAAAAAACGTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.555

98.325

0.517
  cinA Streptococcus mitis SK321

46.234

92.105

0.426
  cinA Streptococcus pneumoniae Rx1

46.214

91.627

0.423
  cinA Streptococcus pneumoniae TIGR4

46.214

91.627

0.423
  cinA Streptococcus pneumoniae R6

46.214

91.627

0.423
  cinA Streptococcus pneumoniae D39

45.953

91.627

0.421
  cinA Streptococcus mitis NCTC 12261

45.455

92.105

0.419
  cinA Streptococcus mutans UA159

45.91

90.67

0.416
  cinA Streptococcus suis isolate S10

40.106

90.67

0.364

Multiple sequence alignment