Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LSO74_RS02555 Genome accession   NZ_OV040719
Coordinates   482268..482921 (-) Length   217 a.a.
NCBI ID   WP_014551147.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 3655 isolate 3655     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 477268..487921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO74_RS02555 (KRLU3655_LOCUS474) sxy/tfoX 482268..482921 (-) 654 WP_014551147.1 DNA transformation protein TfoX Regulator
  LSO74_RS02560 (KRLU3655_LOCUS475) recA 483294..484358 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  LSO74_RS02565 (KRLU3655_LOCUS476) recX 484437..484895 (+) 459 WP_005651075.1 recombination regulator RecX -
  LSO74_RS02570 (KRLU3655_LOCUS477) crcB 484892..485278 (-) 387 WP_005658943.1 fluoride efflux transporter CrcB -
  LSO74_RS02575 (KRLU3655_LOCUS478) - 485278..486096 (-) 819 WP_005658945.1 Cof-type HAD-IIB family hydrolase -
  LSO74_RS02580 (KRLU3655_LOCUS479) - 486499..487503 (+) 1005 WP_005658947.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=1035753 LSO74_RS02555 WP_014551147.1 482268..482921(-) (sxy/tfoX) [Haemophilus influenzae strain 3655 isolate 3655]
MNIKDEHIESVCSLLDRLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQVLRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1035753 LSO74_RS02555 WP_014551147.1 482268..482921(-) (sxy/tfoX) [Haemophilus influenzae strain 3655 isolate 3655]
ATGAATATAAAGGATGAGCATATAGAGAGCGTTTGCTCTTTGTTAGATCGGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACTACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGGTTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(15-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

98.157

100

0.982

Multiple sequence alignment