Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ABKQ09_RS09025 Genome accession   NZ_CP166870
Coordinates   1774158..1775408 (+) Length   416 a.a.
NCBI ID   WP_061670913.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1769158..1780408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS08995 (ABKQ09_08990) yfmH 1769241..1770527 (+) 1287 WP_268384311.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ABKQ09_RS09000 (ABKQ09_08995) ymfI 1770584..1771312 (+) 729 WP_268369782.1 elongation factor P 5-aminopentanone reductase -
  ABKQ09_RS09005 (ABKQ09_09000) - 1771393..1771650 (+) 258 WP_003328873.1 DUF3243 domain-containing protein -
  ABKQ09_RS09010 (ABKQ09_09005) - 1771780..1772571 (+) 792 WP_003328872.1 YmfK family protein -
  ABKQ09_RS09015 (ABKQ09_09010) - 1772590..1773507 (+) 918 WP_010788648.1 RodZ family helix-turn-helix domain-containing protein -
  ABKQ09_RS09020 (ABKQ09_09015) pgsA 1773558..1774139 (+) 582 WP_003328870.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABKQ09_RS09025 (ABKQ09_09020) cinA 1774158..1775408 (+) 1251 WP_061670913.1 competence/damage-inducible protein A Machinery gene
  ABKQ09_RS09030 (ABKQ09_09025) recA 1775580..1776623 (+) 1044 WP_003328867.1 recombinase RecA Machinery gene
  ABKQ09_RS09035 (ABKQ09_09030) - 1776908..1778137 (+) 1230 WP_268519135.1 serine hydrolase -
  ABKQ09_RS09040 (ABKQ09_09035) rny 1778395..1779957 (+) 1563 WP_003328865.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45240.50 Da        Isoelectric Point: 4.8055

>NTDB_id=1035752 ABKQ09_RS09025 WP_061670913.1 1774158..1775408(+) (cinA) [Bacillus atrophaeus strain F4]
MELGKKAEIIAVGSELLLGQIANTNAQFISKELAEIGINVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANVLGRPLVLDDEAFQSIEDYFKKTKRTMSPNNRKQALVIEGSDVLANKFGMAPGMLTEHEARLYMLLPGPPSEL
HPMFENEAKPLLLEKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADESETERLL
KETEAVILDRVGEFFYGYDDTSLVKELSKACKEKGMTLSSAESFTGGLFAEWLTDLSGASQLFAGGVVCYSNEMKQHTLG
VKPDTLQQFGAVSKECAGELASGIKRLTGSDIGISFTGVAGPEGQEGHAPGHVFIGIFADGKEEVHEFNFAGSRTGVRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1035752 ABKQ09_RS09025 WP_061670913.1 1774158..1775408(+) (cinA) [Bacillus atrophaeus strain F4]
ATGGAGTTAGGAAAAAAAGCAGAAATTATTGCGGTCGGTTCAGAGCTTTTACTCGGTCAGATCGCCAATACCAACGCTCA
ATTTATCAGTAAAGAGCTTGCCGAGATCGGCATTAATGTGTTTTATCATACAGCTGTCGGAGACAACCCTGAGCGGCTGA
AGCAAGTCATCCGCATTGCTGAAGAACGTTCTGATTTTATCATTTTTTCAGGGGGGCTCGGACCGACGAAAGATGATTTA
ACAAAAGAAACAATCGCAAATGTGCTGGGCCGTCCGCTCGTTCTTGATGATGAGGCTTTTCAATCAATTGAAGATTATTT
CAAGAAAACAAAGCGTACGATGTCACCGAATAACCGTAAACAGGCGCTTGTGATTGAAGGCTCAGACGTATTGGCCAATA
AATTCGGCATGGCGCCGGGGATGCTGACAGAGCACGAAGCCCGTCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAACTG
CACCCTATGTTTGAAAACGAGGCCAAGCCGCTTCTTCTAGAAAAACTCGGATCAAATGAAAAAATCGTTTCAACCGTTCT
CCGTTTTTTTGGAATCGGCGAGTCCCAGCTGGAAGCTGATTTAGAAGATATTATTGATGCACAGACCAATCCGACAATTG
CTCCTTTGGCTGCGGACGGAGAAGTGACGCTGCGCCTCACTGCAAAGCATGCGGATGAATCGGAAACAGAGCGGCTGCTA
AAAGAGACTGAAGCCGTGATTTTAGACCGTGTCGGAGAGTTTTTCTACGGGTATGATGATACATCTCTTGTCAAAGAGCT
TTCAAAAGCGTGCAAGGAAAAAGGAATGACTCTTTCTTCAGCGGAGAGCTTTACAGGCGGTCTGTTCGCTGAATGGCTGA
CTGATTTAAGCGGTGCTTCGCAATTGTTTGCCGGCGGCGTTGTTTGCTATTCAAATGAGATGAAGCAGCACACCTTGGGG
GTAAAGCCTGACACCCTGCAGCAGTTCGGAGCAGTCAGCAAAGAATGCGCGGGAGAGCTTGCCTCGGGGATTAAACGGCT
GACGGGCAGTGACATTGGAATCAGTTTTACCGGCGTGGCCGGTCCTGAAGGGCAAGAGGGCCATGCCCCGGGCCATGTCT
TTATCGGCATTTTCGCGGACGGAAAAGAAGAGGTTCATGAATTTAACTTTGCAGGCTCCAGAACAGGCGTCAGAAAGCGC
GCTGCCAAATACGGATGTCATTTAATCCTGAAACTCTTAGAACAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

89.423

100

0.894
  cinA Streptococcus mitis NCTC 12261

46.651

100

0.469
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus mitis SK321

46.172

100

0.464
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.464
  cinA Streptococcus pneumoniae R6

46.172

100

0.464
  cinA Streptococcus pneumoniae D39

45.933

100

0.462
  cinA Streptococcus mutans UA159

46.489

99.279

0.462
  cinA Streptococcus suis isolate S10

42.287

90.385

0.382

Multiple sequence alignment