Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SD311_RS06000 Genome accession   NZ_CP166245
Coordinates   1277160..1278209 (+) Length   349 a.a.
NCBI ID   WP_017724322.1    Uniprot ID   A0A418IL08
Organism   Staphylococcus sp. KG4-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1272160..1283209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD311_RS05975 (SD311_005975) ymfI 1272866..1273570 (+) 705 WP_017724317.1 elongation factor P 5-aminopentanone reductase -
  SD311_RS05980 (SD311_005980) - 1273756..1274586 (+) 831 WP_017724318.1 YmfK family protein -
  SD311_RS05985 (SD311_005985) - 1274618..1275010 (+) 393 WP_017724319.1 RodZ family helix-turn-helix domain-containing protein -
  SD311_RS05990 (SD311_005990) pgsA 1275062..1275637 (+) 576 WP_017724320.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SD311_RS05995 (SD311_005995) - 1275844..1276986 (+) 1143 WP_017724321.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  SD311_RS06000 (SD311_006000) recA 1277160..1278209 (+) 1050 WP_017724322.1 recombinase RecA Machinery gene
  SD311_RS06005 (SD311_006005) rny 1278693..1280252 (+) 1560 WP_017724323.1 ribonuclease Y -
  SD311_RS06010 (SD311_006010) - 1280470..1280685 (-) 216 WP_017724324.1 hypothetical protein -
  SD311_RS06015 (SD311_006015) - 1280852..1281640 (+) 789 WP_017724325.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37694.61 Da        Isoelectric Point: 4.9285

>NTDB_id=1033951 SD311_RS06000 WP_017724322.1 1277160..1278209(+) (recA) [Staphylococcus sp. KG4-3]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNEARKVSSVSSGSVTLDNALGVGGYPKGRIVEIYGPESSGKTTVALHAIA
EVQRNGGVAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGKENVKSYLKENPAVKAEIDR
KLREKLGIFDGDVEESEAENTATLLDEEE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1033951 SD311_RS06000 WP_017724322.1 1277160..1278209(+) (recA) [Staphylococcus sp. KG4-3]
TTGGATAACGATCGTCAAAAGGCTTTAGATACAGTAATTAAAAATATGGAGAAATCATTTGGTAAAGGCGCGGTAATGAA
ATTGGGCGATAACGAAGCACGCAAAGTTTCAAGTGTTTCAAGTGGTTCTGTAACATTAGATAATGCTTTAGGAGTAGGTG
GTTACCCTAAAGGTAGAATTGTAGAAATTTATGGTCCAGAAAGTTCTGGTAAAACCACTGTGGCACTTCATGCCATTGCG
GAAGTTCAGAGAAATGGTGGCGTGGCAGCTTTTATTGACGCTGAACATGCATTAGACCCAGTTTACGCAGAAGCATTGGG
TGTTGATATTCAAAACTTATATTTATCACAACCTGACCATGGGGAACAAGGATTAGAAATTGCAGAAGCATTTGTAAGAA
GTGGTGCTGTAGACATAGTTGTTGTTGACTCTGTTGCAGCATTAACACCTAAAGCAGAAATTGAAGGTGAAATGGGAGAT
ACACACGTTGGTTTACAAGCACGTTTGATGTCACAAGCCCTAAGAAAACTTTCAGGTGCGATATCTAAATCAAATACGAC
TGCAGTATTCATTAACCAAATCCGTGAGAAAGTCGGCGTTATGTTCGGTAACCCTGAAGTTACTCCAGGTGGTCGTGCAC
TGAAATTCTATAGCTCTGTTCGTTTAGAAGTACGCCGTGCGGAACAATTAAAACAAGGACAAGATATTGTCGGTAATAGA
ACTAAAATTAAAGTTGTTAAGAATAAAGTCGCACCACCATTTAGAGTTGCTGAAGTTGATATTATGTATGGTAAAGGCAT
CTCTAAAGAGGGGGAATTAATCGATTTAGGTGTTGAAAATGAAATCGTTGATAAGTCGGGTGCTTGGTATTCTTATAATG
GCGACAGAATGGGACAAGGTAAAGAAAATGTAAAATCTTACCTTAAAGAAAACCCTGCTGTCAAAGCAGAAATAGATAGA
AAGCTAAGAGAAAAATTAGGTATATTTGATGGAGATGTTGAAGAATCGGAAGCTGAAAATACAGCGACACTTTTGGATGA
AGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A418IL08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

75.767

93.41

0.708
  recA Latilactobacillus sakei subsp. sakei 23K

68.678

99.713

0.685
  recA Streptococcus mutans UA159

63.143

100

0.633
  recA Streptococcus pyogenes NZ131

66.869

94.269

0.63
  recA Streptococcus pneumoniae R6

64.327

97.994

0.63
  recA Streptococcus pneumoniae Rx1

64.327

97.994

0.63
  recA Streptococcus pneumoniae D39

64.327

97.994

0.63
  recA Streptococcus pneumoniae TIGR4

64.327

97.994

0.63
  recA Neisseria gonorrhoeae strain FA1090

63.663

98.567

0.628
  recA Neisseria gonorrhoeae MS11

63.663

98.567

0.628
  recA Neisseria gonorrhoeae MS11

63.663

98.567

0.628
  recA Streptococcus mitis NCTC 12261

63.006

99.14

0.625
  recA Lactococcus lactis subsp. cremoris KW2

65.559

94.842

0.622
  recA Streptococcus mitis SK321

65.165

95.415

0.622
  recA Acinetobacter baylyi ADP1

65.337

93.41

0.61
  recA Helicobacter pylori 26695

64.634

93.983

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.134

94.269

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.724

93.41

0.605
  recA Vibrio cholerae strain A1552

64.724

93.41

0.605
  recA Helicobacter pylori strain NCTC11637

64.329

93.983

0.605
  recA Acinetobacter baumannii D1279779

64.417

93.41

0.602
  recA Ralstonia pseudosolanacearum GMI1000

65.176

89.685

0.585
  recA Glaesserella parasuis strain SC1401

58.551

98.854

0.579
  recA Pseudomonas stutzeri DSM 10701

61.963

93.41

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

94.842

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.502

91.404

0.553

Multiple sequence alignment