Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB3Z07_RS10760 Genome accession   NZ_CP162630
Coordinates   2241540..2242580 (+) Length   346 a.a.
NCBI ID   WP_368659230.1    Uniprot ID   -
Organism   Metabacillus halosaccharovorans strain Hao 2024     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2236540..2247580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Z07_RS10735 (AB3Z07_10735) - 2237184..2237441 (+) 258 WP_078434286.1 DUF3243 domain-containing protein -
  AB3Z07_RS10740 (AB3Z07_10740) - 2237550..2238341 (+) 792 WP_078434285.1 DUF3388 domain-containing protein -
  AB3Z07_RS10745 (AB3Z07_10745) - 2238358..2239239 (+) 882 WP_368659228.1 helix-turn-helix domain-containing protein -
  AB3Z07_RS10750 (AB3Z07_10750) pgsA 2239381..2239959 (+) 579 WP_026559279.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3Z07_RS10755 (AB3Z07_10755) cinA 2239989..2241236 (+) 1248 WP_368659229.1 competence/damage-inducible protein A Machinery gene
  AB3Z07_RS10760 (AB3Z07_10760) recA 2241540..2242580 (+) 1041 WP_368659230.1 recombinase RecA Machinery gene
  AB3Z07_RS10765 (AB3Z07_10765) rny 2243048..2244613 (+) 1566 WP_139367385.1 ribonuclease Y -
  AB3Z07_RS10770 (AB3Z07_10770) - 2244874..2245668 (+) 795 WP_026559275.1 TIGR00282 family metallophosphoesterase -
  AB3Z07_RS10775 (AB3Z07_10775) spoVS 2245874..2246134 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  AB3Z07_RS10780 (AB3Z07_10780) - 2246234..2247157 (+) 924 WP_368659231.1 dipeptidase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37587.81 Da        Isoelectric Point: 4.8474

>NTDB_id=1027668 AB3Z07_RS10760 WP_368659230.1 2241540..2242580(+) (recA) [Metabacillus halosaccharovorans strain Hao 2024]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDRKVSTAPSGSLALDAALGIGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
KIKVVKNKVAPPFKVAEVDIMYGEGISKEGEIIDLGSEIDIVQKSGSWYSYNEERLGQGRENAKQFLKENPALRLEIQEK
IRQHYGLDEEVIAADESQEEMDLLGE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1027668 AB3Z07_RS10760 WP_368659230.1 2241540..2242580(+) (recA) [Metabacillus halosaccharovorans strain Hao 2024]
GTGAGCGATCGTCAAGCCGCCTTAGATATGGCGTTAAAACAAATAGAGAAACAATTCGGTAAAGGTTCTATCATGAAATT
AGGAGAGCAAACAGATCGTAAGGTATCAACTGCTCCAAGTGGTTCTTTAGCTCTTGATGCAGCGTTAGGGATTGGTGGTT
ATCCTCGAGGTAGAATCATAGAAATATATGGACCAGAGAGTTCTGGTAAAACAACGGTTGCTCTACATGCAATTGCAGAA
GTTCAACAACAAGGTGGTCAAGCAGCATTTATTGATGCTGAGCATGCTTTAGATCCGGTCTATGCTCAAAAATTAGGTGT
TAATATTGATGAATTATTACTTTCACAGCCTGATACAGGGGAGCAAGCGCTAGAGATTGCTGAGGCACTTGTTCGTAGTG
GTGCCGTTGATATTCTTGTTATTGACTCAGTAGCAGCATTAGTACCAAAAGCTGAAATTGAGGGTGAGATGGGTGATTCT
CACGTTGGACTGCAAGCTCGATTAATGTCACAAGCATTACGTAAGCTATCAGGTGCAATTAATAAATCAAAAACAATTGC
TATCTTCATTAACCAAATTCGTGAAAAAGTAGGCGTTATGTTTGGTAACCCTGAGACAACTCCTGGTGGTCGAGCACTAA
AATTCTATTCTTCTGTTCGTTTAGAAGTTCGTCGTGCTGAGACACTTAAGCAAGGAAATGAAATGGTTGGGAACAAAACA
AAAATTAAAGTCGTGAAGAATAAGGTTGCACCTCCATTTAAAGTGGCTGAAGTTGATATTATGTATGGAGAGGGAATTTC
TAAAGAGGGAGAAATAATTGATCTTGGTTCAGAAATTGATATTGTTCAAAAGAGTGGATCATGGTATTCATATAATGAAG
AACGCTTAGGTCAAGGTCGAGAAAATGCAAAACAATTCCTGAAGGAAAATCCTGCTCTTCGCTTAGAAATTCAAGAAAAG
ATTCGTCAACATTATGGTCTGGATGAAGAAGTTATTGCCGCAGATGAAAGTCAGGAAGAAATGGATCTATTAGGAGAATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

91.768

94.798

0.87
  recA Latilactobacillus sakei subsp. sakei 23K

73.219

100

0.743
  recA Streptococcus mitis NCTC 12261

68.222

99.133

0.676
  recA Streptococcus mitis SK321

67.442

99.422

0.671
  recA Streptococcus pneumoniae Rx1

67.052

100

0.671
  recA Streptococcus pneumoniae D39

67.052

100

0.671
  recA Streptococcus pneumoniae R6

67.052

100

0.671
  recA Streptococcus pneumoniae TIGR4

67.052

100

0.671
  recA Streptococcus mutans UA159

69.277

95.954

0.665
  recA Streptococcus pyogenes NZ131

69.817

94.798

0.662
  recA Lactococcus lactis subsp. cremoris KW2

67.857

97.11

0.659
  recA Ralstonia pseudosolanacearum GMI1000

66.159

94.798

0.627
  recA Neisseria gonorrhoeae MS11

63.343

98.555

0.624
  recA Neisseria gonorrhoeae MS11

63.343

98.555

0.624
  recA Neisseria gonorrhoeae strain FA1090

63.343

98.555

0.624
  recA Helicobacter pylori 26695

62.865

98.844

0.621
  recA Helicobacter pylori strain NCTC11637

62.865

98.844

0.621
  recA Acinetobacter baumannii D1279779

61.671

100

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.722

97.688

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.732

92.775

0.61
  recA Vibrio cholerae strain A1552

65.732

92.775

0.61
  recA Acinetobacter baylyi ADP1

61.047

99.422

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.509

0.601
  recA Glaesserella parasuis strain SC1401

59.767

99.133

0.592
  recA Pseudomonas stutzeri DSM 10701

63.125

92.486

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

92.486

0.566

Multiple sequence alignment