Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB3U99_RS10290 Genome accession   NZ_CP162613
Coordinates   2211275..2212318 (+) Length   347 a.a.
NCBI ID   WP_400247335.1    Uniprot ID   -
Organism   Niallia tiangongensis strain JL1B1071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2206275..2217318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3U99_RS10260 (AB3U99_10250) - 2206676..2206933 (+) 258 WP_031534605.1 DUF3243 domain-containing protein -
  AB3U99_RS10265 (AB3U99_10255) - 2207039..2207293 (+) 255 WP_400247327.1 hypothetical protein -
  AB3U99_RS10270 (AB3U99_10260) - 2207345..2208136 (+) 792 WP_400247329.1 DUF3388 domain-containing protein -
  AB3U99_RS10275 (AB3U99_10265) - 2208148..2209041 (+) 894 WP_400247330.1 helix-turn-helix domain-containing protein -
  AB3U99_RS10280 (AB3U99_10270) pgsA 2209157..2209735 (+) 579 WP_400247332.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3U99_RS10285 (AB3U99_10275) cinA 2209834..2211072 (+) 1239 WP_400247334.1 competence/damage-inducible protein A Machinery gene
  AB3U99_RS10290 (AB3U99_10280) recA 2211275..2212318 (+) 1044 WP_400247335.1 recombinase RecA Machinery gene
  AB3U99_RS10295 (AB3U99_10285) rny 2212845..2214416 (+) 1572 WP_235247713.1 ribonuclease Y -
  AB3U99_RS10300 (AB3U99_10290) - 2214563..2215360 (+) 798 WP_400247337.1 TIGR00282 family metallophosphoesterase -
  AB3U99_RS10305 (AB3U99_10295) spoVS 2215536..2215796 (+) 261 WP_016201204.1 stage V sporulation protein SpoVS -
  AB3U99_RS10310 (AB3U99_10300) - 2216282..2217205 (+) 924 WP_400247339.1 dipeptidase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37765.14 Da        Isoelectric Point: 5.2149

>NTDB_id=1027513 AB3U99_RS10290 WP_400247335.1 2211275..2212318(+) (recA) [Niallia tiangongensis strain JL1B1071]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQADKVISTSPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAIAE
VQANGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGTDMVGNKT
KIKVVKNKVAPPFKVAEVDIMYGEGISKEGEIIDLGSDLDIVQKSGAWYSYNDERLGQGRENAKQFLKENKEMRLEIQKK
IRDHYGLDKEVTLKPEKDDQEQFELID

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1027513 AB3U99_RS10290 WP_400247335.1 2211275..2212318(+) (recA) [Niallia tiangongensis strain JL1B1071]
TTGAGTGATCGTCAAGCTGCATTAGAAATGGCGTTAAAACAAATAGAAAAACAATTCGGTAAAGGTAGTATTATGAAGCT
GGGAGAGCAAGCTGATAAAGTCATTTCTACTAGTCCAAGTGGATCGTTAGCTTTAGATGCAGCCCTAGGTGTTGGTGGAT
ATCCAAGAGGTCGTATTGTTGAGATATATGGTCCTGAAAGTTCAGGTAAAACAACAGTAGCGCTACATGCTATTGCTGAG
GTGCAGGCAAATGGCGGACAAGCAGCATTTATTGATGCAGAGCATGCATTAGATCCGGTTTATGCACAAAAGCTTGGCGT
TAATATCGATGAATTATTACTTTCTCAACCAGATACTGGAGAGCAAGCGCTAGAAATTGCAGAAGCTTTGGTTCGAAGTG
GAGCAGTTGATATTTTAGTAATTGACTCTGTAGCTGCACTTGTACCAAAGGCAGAGATTGAAGGAGAAATGGGAGATTCC
CATGTTGGACTTCAAGCACGCTTAATGTCACAAGCCCTTCGTAAATTATCTGGAGCAATTAATAAGTCAAAAACAATTGC
TATTTTCATTAACCAAATTCGTGAAAAAGTCGGAGTAATGTTCGGAAACCCTGAAACAACTCCTGGTGGACGTGCATTGA
AATTCTATTCATCTGTTCGTTTAGAAGTTCGTCGTGCTGAAACGTTAAAACAAGGAACAGACATGGTAGGAAACAAAACC
AAAATTAAGGTTGTTAAAAATAAAGTAGCACCACCTTTCAAAGTGGCAGAAGTAGATATCATGTATGGAGAAGGTATCTC
TAAAGAAGGAGAGATTATTGATCTTGGTTCAGATCTTGATATTGTTCAGAAGAGTGGGGCTTGGTATTCCTATAATGACG
AAAGATTAGGACAAGGCCGTGAAAACGCGAAGCAATTCTTGAAAGAAAATAAAGAAATGCGTCTAGAAATTCAAAAGAAA
ATCCGCGATCATTACGGGCTCGATAAAGAAGTAACACTAAAGCCTGAAAAGGACGACCAAGAACAATTTGAATTAATCGA
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.634

94.524

0.847
  recA Latilactobacillus sakei subsp. sakei 23K

75

96.83

0.726
  recA Streptococcus mitis NCTC 12261

67.236

100

0.68
  recA Streptococcus mitis SK321

67.236

100

0.68
  recA Streptococcus mutans UA159

67.442

99.135

0.669
  recA Streptococcus pneumoniae Rx1

70.303

95.101

0.669
  recA Streptococcus pneumoniae D39

70.303

95.101

0.669
  recA Streptococcus pneumoniae R6

70.303

95.101

0.669
  recA Streptococcus pneumoniae TIGR4

70.303

95.101

0.669
  recA Lactococcus lactis subsp. cremoris KW2

68.155

96.83

0.66
  recA Streptococcus pyogenes NZ131

69.207

94.524

0.654
  recA Neisseria gonorrhoeae strain FA1090

65.559

95.389

0.625
  recA Neisseria gonorrhoeae MS11

65.559

95.389

0.625
  recA Neisseria gonorrhoeae MS11

65.559

95.389

0.625
  recA Vibrio cholerae strain A1552

64.671

96.254

0.622
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.671

96.254

0.622
  recA Ralstonia pseudosolanacearum GMI1000

68.051

90.202

0.614
  recA Helicobacter pylori 26695

62.353

97.983

0.611
  recA Helicobacter pylori strain NCTC11637

62.353

97.983

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.17

98.271

0.611
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.22

94.236

0.605
  recA Glaesserella parasuis strain SC1401

61.31

96.83

0.594
  recA Pseudomonas stutzeri DSM 10701

63.438

92.219

0.585
  recA Acinetobacter baumannii D1279779

62.112

92.795

0.576
  recA Acinetobacter baylyi ADP1

61.801

92.795

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

92.219

0.573

Multiple sequence alignment