Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB3U99_RS10285 Genome accession   NZ_CP162613
Coordinates   2209834..2211072 (+) Length   412 a.a.
NCBI ID   WP_400247334.1    Uniprot ID   -
Organism   Niallia tiangongensis strain JL1B1071     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2204834..2216072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3U99_RS10255 (AB3U99_10245) ymfI 2205860..2206582 (+) 723 WP_400247325.1 elongation factor P 5-aminopentanone reductase -
  AB3U99_RS10260 (AB3U99_10250) - 2206676..2206933 (+) 258 WP_031534605.1 DUF3243 domain-containing protein -
  AB3U99_RS10265 (AB3U99_10255) - 2207039..2207293 (+) 255 WP_400247327.1 hypothetical protein -
  AB3U99_RS10270 (AB3U99_10260) - 2207345..2208136 (+) 792 WP_400247329.1 DUF3388 domain-containing protein -
  AB3U99_RS10275 (AB3U99_10265) - 2208148..2209041 (+) 894 WP_400247330.1 helix-turn-helix domain-containing protein -
  AB3U99_RS10280 (AB3U99_10270) pgsA 2209157..2209735 (+) 579 WP_400247332.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3U99_RS10285 (AB3U99_10275) cinA 2209834..2211072 (+) 1239 WP_400247334.1 competence/damage-inducible protein A Machinery gene
  AB3U99_RS10290 (AB3U99_10280) recA 2211275..2212318 (+) 1044 WP_400247335.1 recombinase RecA Machinery gene
  AB3U99_RS10295 (AB3U99_10285) rny 2212845..2214416 (+) 1572 WP_235247713.1 ribonuclease Y -
  AB3U99_RS10300 (AB3U99_10290) - 2214563..2215360 (+) 798 WP_400247337.1 TIGR00282 family metallophosphoesterase -
  AB3U99_RS10305 (AB3U99_10295) spoVS 2215536..2215796 (+) 261 WP_016201204.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44878.58 Da        Isoelectric Point: 5.1964

>NTDB_id=1027512 AB3U99_RS10285 WP_400247334.1 2209834..2211072(+) (cinA) [Niallia tiangongensis strain JL1B1071]
MNAEIIAVGSELLLGQIANTNAQFISKHLADLGVNVYYHTVVGDNAARLMEAIKIAESRAQLLIFSGGLGPTKDDLTKET
IANHLGKELVFDKAALQSIEDYFFKTKRTMTENNKKQALVLEGCDVLPNDHGMAPGMFLKKDDQFYMLLPGPPKEIQPMF
VKYGFPAIQEQMTSKDVIISRVLRFFGIGESLLETKIEDLIDAQTNPTIAPLAGDGEVTLRITCKHDSVAEADKLIAKTE
EEIFSRVGEFFYGYDDTTLMNELAHVLLKKNLTLAAAESLTGGLFQQEVTSIPGAGNIFQGGVVCYTNEVKHQILHVKEA
TIQEHGVVSEPCAKELAENIARLLNADIGISFTGVAGPDELEGNPVGTVFIGIAKKGEPTKVEALALSGTRAGNRSRSVK
YGQYFLLKMLKG

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=1027512 AB3U99_RS10285 WP_400247334.1 2209834..2211072(+) (cinA) [Niallia tiangongensis strain JL1B1071]
ATGAATGCAGAAATTATCGCGGTTGGCTCAGAATTATTGCTTGGGCAAATTGCTAATACAAATGCGCAATTTATTTCCAA
GCATTTAGCCGACTTAGGAGTAAATGTTTATTATCATACAGTTGTAGGAGATAATGCTGCTCGTTTAATGGAAGCGATTA
AAATCGCAGAAAGTCGAGCACAATTGCTTATTTTCTCAGGAGGACTTGGTCCGACGAAGGACGACTTAACAAAAGAAACG
ATTGCCAATCATCTAGGAAAAGAGCTAGTCTTTGATAAAGCTGCACTTCAATCAATTGAAGACTATTTTTTTAAGACAAA
ACGCACAATGACCGAAAATAATAAAAAACAAGCGTTAGTTCTAGAAGGATGTGACGTTCTTCCCAATGATCATGGAATGG
CTCCTGGCATGTTTTTGAAAAAAGACGATCAATTTTATATGCTCTTACCTGGACCGCCAAAAGAAATTCAGCCAATGTTT
GTAAAATATGGATTTCCAGCGATACAAGAGCAAATGACAAGTAAAGATGTCATCATTTCACGTGTGCTTCGCTTTTTTGG
AATTGGGGAGTCTTTATTAGAAACAAAAATTGAAGATTTAATTGATGCACAAACAAACCCGACAATTGCGCCTCTTGCAG
GAGACGGGGAAGTAACATTGCGTATTACGTGTAAGCATGATTCAGTGGCAGAAGCAGATAAATTAATTGCAAAGACAGAG
GAAGAAATATTCTCTCGAGTAGGCGAATTCTTCTATGGATATGATGACACAACGTTAATGAACGAACTCGCTCACGTATT
ATTAAAGAAAAATTTGACCCTCGCAGCTGCAGAAAGCTTAACAGGTGGCCTATTTCAACAAGAGGTTACGAGTATTCCAG
GTGCCGGAAATATCTTCCAAGGAGGAGTTGTCTGTTACACAAATGAGGTGAAGCATCAAATCCTTCATGTGAAAGAGGCA
ACCATTCAAGAACATGGCGTTGTTAGTGAGCCATGTGCAAAGGAGCTTGCAGAAAATATTGCAAGATTATTAAATGCAGA
TATTGGCATAAGCTTTACAGGCGTTGCTGGTCCAGATGAACTGGAGGGGAATCCGGTTGGTACCGTTTTTATCGGAATAG
CTAAAAAAGGTGAGCCGACTAAAGTGGAAGCTTTAGCGCTTAGTGGTACTAGAGCTGGTAATCGAAGCAGAAGTGTGAAA
TATGGTCAATATTTTTTATTGAAAATGTTGAAGGGATAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.391

99.272

0.6
  cinA Streptococcus mitis SK321

46.793

100

0.478
  cinA Streptococcus mitis NCTC 12261

46.081

100

0.471
  cinA Streptococcus pneumoniae TIGR4

45.952

100

0.468
  cinA Streptococcus pneumoniae Rx1

45.714

100

0.466
  cinA Streptococcus pneumoniae R6

45.714

100

0.466
  cinA Streptococcus pneumoniae D39

45.476

100

0.464
  cinA Streptococcus mutans UA159

46.059

98.544

0.454
  cinA Streptococcus suis isolate S10

41.425

91.99

0.381

Multiple sequence alignment