Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB3N04_RS18900 Genome accession   NZ_CP162551
Coordinates   3441861..3442910 (+) Length   349 a.a.
NCBI ID   WP_368504109.1    Uniprot ID   -
Organism   Alkalihalophilus sp. As8PL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3436861..3447910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N04_RS18880 (AB3N04_18880) - 3437459..3437953 (+) 495 WP_317122675.1 YajQ family cyclic di-GMP-binding protein -
  AB3N04_RS18885 (AB3N04_18885) pgsA 3437988..3438566 (+) 579 WP_368504106.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3N04_RS18890 (AB3N04_18890) cinA 3438579..3439829 (+) 1251 WP_368504107.1 competence/damage-inducible protein A Machinery gene
  AB3N04_RS18895 (AB3N04_18895) - 3439829..3441448 (+) 1620 WP_368504108.1 DEAD/DEAH box helicase -
  AB3N04_RS18900 (AB3N04_18900) recA 3441861..3442910 (+) 1050 WP_368504109.1 recombinase RecA Machinery gene
  AB3N04_RS18905 (AB3N04_18905) - 3442971..3443963 (+) 993 WP_368504110.1 exonuclease SbcCD subunit D -
  AB3N04_RS18910 (AB3N04_18910) - 3443956..3445374 (+) 1419 WP_368504111.1 AAA family ATPase -
  AB3N04_RS18915 (AB3N04_18915) - 3445402..3445653 (+) 252 WP_317122682.1 hypothetical protein -
  AB3N04_RS18920 (AB3N04_18920) - 3445646..3446323 (+) 678 WP_368504112.1 ATP-binding protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37655.94 Da        Isoelectric Point: 5.0721

>NTDB_id=1027099 AB3N04_RS18900 WP_368504109.1 3441861..3442910(+) (recA) [Alkalihalophilus sp. As8PL]
MGDRKAALDMALRQIEKQFGKGSIMKLGEQVDQRVSTVSSGALALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
IQRNGGQAAFIDAEHALDPVYAQNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAISKSKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISRVGSILDIAAELDIVQKSGAWYSFNEERLGQGRENSKQYLKENPAVASEVETL
IRDHHGLNGEIKVEPATEEELDDVPLDLK

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1027099 AB3N04_RS18900 WP_368504109.1 3441861..3442910(+) (recA) [Alkalihalophilus sp. As8PL]
ATGGGTGATCGTAAAGCAGCTCTTGATATGGCACTGCGCCAAATCGAAAAGCAATTTGGTAAAGGTTCGATAATGAAGCT
TGGTGAACAAGTGGACCAACGAGTTTCTACTGTATCTAGTGGAGCGTTAGCACTTGATATCGCACTAGGAGTAGGCGGAT
ATCCACGTGGTCGAATTATCGAAGTATACGGACCGGAATCTTCAGGTAAAACAACAGTAGCACTTCACGCGATTGCTGAA
ATACAGCGTAATGGTGGACAAGCTGCATTTATTGATGCGGAGCATGCACTTGATCCTGTATATGCTCAAAATTTGGGTGT
TAATATTGATGAATTATTATTATCTCAACCTGACACTGGGGAACAAGCGCTTGAGATTGCTGAAGCATTAGTTCGTAGTG
GTGCGGTTGATATGATTGTTATTGATAGTGTGGCGGCACTTGTACCAAAAGCTGAGATCGAAGGAGATATGGGAGATAGC
CACGTTGGTTTACAAGCACGTCTAATGTCTCAAGCATTACGTAAGCTTTCGGGTGCTATTAGTAAATCGAAAACGATTGC
TGTGTTCATTAACCAAATCCGTGAAAAAGTTGGGGTTATGTTCGGTAATCCTGAAACAACTCCTGGTGGTCGTGCTTTGA
AATTCTATTCTTCTGTTCGTCTAGAAGTACGTCGTGCGGAAACGTTGAAGCAAGGTAACGATATGGTAGGGAATAAGACC
AAGATTAAAGTGGTTAAGAACAAAGTAGCTCCTCCTTTCAGAGTAGCTGAAGTAGATATCATGTATGGTGAAGGGATCTC
AAGAGTAGGTTCGATTTTAGATATCGCAGCTGAACTTGATATTGTTCAAAAAAGTGGGGCGTGGTATTCGTTTAACGAAG
AACGTCTCGGTCAAGGAAGAGAGAATTCTAAGCAATACTTAAAAGAAAATCCAGCTGTTGCTTCTGAAGTTGAAACGCTT
ATTCGCGATCACCACGGTTTAAATGGTGAAATTAAAGTTGAGCCAGCTACTGAAGAAGAGCTTGATGATGTACCATTAGA
TTTGAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.756

93.983

0.797
  recA Latilactobacillus sakei subsp. sakei 23K

72.941

97.421

0.711
  recA Streptococcus pneumoniae D39

65.928

100

0.682
  recA Streptococcus pneumoniae R6

65.928

100

0.682
  recA Streptococcus pneumoniae TIGR4

65.928

100

0.682
  recA Streptococcus pneumoniae Rx1

65.928

100

0.682
  recA Streptococcus pyogenes NZ131

66.856

100

0.676
  recA Streptococcus mitis SK321

67.341

99.14

0.668
  recA Streptococcus mitis NCTC 12261

67.251

97.994

0.659
  recA Streptococcus mutans UA159

65.517

99.713

0.653
  recA Lactococcus lactis subsp. cremoris KW2

67.781

94.269

0.639
  recA Glaesserella parasuis strain SC1401

61.254

100

0.616
  recA Neisseria gonorrhoeae strain FA1090

63.05

97.708

0.616
  recA Neisseria gonorrhoeae MS11

63.05

97.708

0.616
  recA Neisseria gonorrhoeae MS11

63.05

97.708

0.616
  recA Ralstonia pseudosolanacearum GMI1000

64.329

93.983

0.605
  recA Acinetobacter baumannii D1279779

60.526

97.994

0.593
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.424

94.556

0.59
  recA Helicobacter pylori 26695

59.475

98.281

0.585
  recA Helicobacter pylori strain NCTC11637

59.475

98.281

0.585
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

93.696

0.585
  recA Acinetobacter baylyi ADP1

62.462

93.123

0.582
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.24

91.977

0.582
  recA Vibrio cholerae strain A1552

63.24

91.977

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

92.55

0.576
  recA Pseudomonas stutzeri DSM 10701

62.187

91.691

0.57

Multiple sequence alignment