Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB3N04_RS18890 Genome accession   NZ_CP162551
Coordinates   3438579..3439829 (+) Length   416 a.a.
NCBI ID   WP_368504107.1    Uniprot ID   A0AB39BRZ1
Organism   Alkalihalophilus sp. As8PL     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3433579..3444829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N04_RS18860 (AB3N04_18860) - 3434319..3435041 (+) 723 WP_368504104.1 SDR family NAD(P)-dependent oxidoreductase -
  AB3N04_RS18865 (AB3N04_18865) - 3435114..3435365 (+) 252 WP_317122672.1 DUF3243 domain-containing protein -
  AB3N04_RS18870 (AB3N04_18870) - 3435643..3436410 (+) 768 WP_317122673.1 DUF3388 domain-containing protein -
  AB3N04_RS18875 (AB3N04_18875) - 3436432..3437322 (+) 891 WP_368504105.1 helix-turn-helix domain-containing protein -
  AB3N04_RS18880 (AB3N04_18880) - 3437459..3437953 (+) 495 WP_317122675.1 YajQ family cyclic di-GMP-binding protein -
  AB3N04_RS18885 (AB3N04_18885) pgsA 3437988..3438566 (+) 579 WP_368504106.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3N04_RS18890 (AB3N04_18890) cinA 3438579..3439829 (+) 1251 WP_368504107.1 competence/damage-inducible protein A Machinery gene
  AB3N04_RS18895 (AB3N04_18895) - 3439829..3441448 (+) 1620 WP_368504108.1 DEAD/DEAH box helicase -
  AB3N04_RS18900 (AB3N04_18900) recA 3441861..3442910 (+) 1050 WP_368504109.1 recombinase RecA Machinery gene
  AB3N04_RS18905 (AB3N04_18905) - 3442971..3443963 (+) 993 WP_368504110.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45461.12 Da        Isoelectric Point: 5.1837

>NTDB_id=1027098 AB3N04_RS18890 WP_368504107.1 3438579..3439829(+) (cinA) [Alkalihalophilus sp. As8PL]
MRAEIIAVGSELLLGQIVNTNAQFLSVELANHGIDVHYQVVVGDNTRRLSEVVTTAANRSDLVILTGGLGPTKDDLTKET
IADFCNKKLVYDEDALTSIIAFFEKRKITMTDNNKKQALVIEGSRVLPNHYGMAPGMVVEAETCQFVLLPGPPREMEPMV
VEQLRPLLQKSNVKNESITSRVLRFFGIGESKLEVMIDDLLRAQSNPTIAPLASEGEVTLRLTVKHHDSYVANQLLDETE
AAIQARVGEFFYGYGESTLMNVLISELKEQKLTISSAESLTGGLFASELTSIAGVSDIFIGSIISYATKVKENSLDVSKE
LIDSHGVVSEPCADQMAKAIKQKLHSDIGISFTGVAGPSSQDNIAPGVVFIGICLPDNKCTVYQINVGGNREAVRHRAIK
YGCFYLLNELKRWNLA

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1027098 AB3N04_RS18890 WP_368504107.1 3438579..3439829(+) (cinA) [Alkalihalophilus sp. As8PL]
ATGAGAGCCGAGATTATTGCAGTAGGATCAGAACTTTTACTTGGCCAAATCGTCAATACAAATGCACAATTCTTATCGGT
TGAGCTGGCTAATCATGGTATTGACGTTCATTACCAAGTTGTAGTCGGGGATAATACAAGGCGTTTAAGTGAAGTCGTTA
CAACGGCTGCTAATCGGTCAGATTTAGTCATTCTAACTGGCGGTCTTGGACCAACGAAAGATGACTTAACGAAAGAAACA
ATTGCTGATTTTTGTAATAAAAAGCTTGTATATGATGAAGATGCGTTGACATCAATTATCGCATTTTTTGAAAAGCGTAA
GATCACAATGACTGATAATAACAAGAAACAAGCACTTGTCATTGAAGGAAGTCGCGTGCTTCCTAATCACTACGGGATGG
CACCTGGTATGGTTGTTGAAGCTGAGACGTGTCAATTCGTCTTACTGCCAGGTCCACCTAGAGAGATGGAGCCAATGGTC
GTAGAGCAACTGAGACCTCTCTTACAAAAAAGTAATGTGAAAAACGAATCAATTACATCAAGAGTACTTCGTTTTTTCGG
CATTGGGGAATCAAAGCTTGAAGTCATGATTGATGATTTGTTAAGGGCGCAGTCAAACCCAACCATCGCCCCTTTGGCAA
GTGAAGGGGAGGTTACATTAAGACTCACGGTAAAACACCATGACTCATATGTAGCAAATCAACTACTAGATGAGACCGAA
GCGGCTATTCAAGCGCGTGTAGGAGAATTCTTTTATGGTTATGGTGAATCGACGCTAATGAATGTCTTAATCTCTGAGTT
GAAAGAGCAAAAGCTTACGATCTCTTCTGCTGAAAGCTTAACAGGAGGTCTTTTTGCAAGTGAACTGACCTCCATTGCTG
GTGTTTCTGATATCTTTATTGGTAGTATTATCTCTTATGCTACAAAAGTGAAGGAAAATAGCTTAGATGTGTCGAAAGAA
TTAATTGATAGCCACGGCGTAGTTAGCGAACCGTGTGCCGACCAAATGGCAAAAGCAATCAAACAGAAGCTTCATTCAGA
TATTGGTATAAGTTTTACAGGAGTCGCTGGACCTAGTTCCCAAGATAACATCGCACCGGGGGTTGTCTTTATCGGCATTT
GCCTCCCGGATAACAAATGCACCGTTTATCAAATAAACGTTGGTGGGAATAGGGAAGCGGTTCGTCATCGCGCGATTAAA
TATGGATGTTTTTATTTGTTGAACGAATTGAAAAGGTGGAATTTAGCATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

54.501

98.798

0.538
  cinA Streptococcus pneumoniae TIGR4

48.418

98.798

0.478
  cinA Streptococcus pneumoniae Rx1

48.175

98.798

0.476
  cinA Streptococcus pneumoniae R6

48.175

98.798

0.476
  cinA Streptococcus pneumoniae D39

47.932

98.798

0.474
  cinA Streptococcus mitis NCTC 12261

47.202

98.798

0.466
  cinA Streptococcus mitis SK321

46.959

98.798

0.464
  cinA Streptococcus mutans UA159

46.898

96.875

0.454
  cinA Streptococcus suis isolate S10

39.44

94.471

0.373

Multiple sequence alignment