Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABZM97_RS09260 Genome accession   NZ_CP160797
Coordinates   1871454..1872497 (+) Length   347 a.a.
NCBI ID   WP_087991658.1    Uniprot ID   -
Organism   Bacillus vallismortis strain BL-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1866454..1877497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS09230 (ABZM97_09230) - 1866461..1867189 (+) 729 WP_087991652.1 SDR family oxidoreductase -
  ABZM97_RS09235 (ABZM97_09235) - 1867270..1867527 (+) 258 WP_087991653.1 DUF3243 domain-containing protein -
  ABZM97_RS09240 (ABZM97_09240) - 1867657..1868448 (+) 792 WP_087991654.1 YmfK family protein -
  ABZM97_RS09245 (ABZM97_09245) rodZ 1868515..1869381 (+) 867 WP_207194100.1 cell shape determination protein RodZ -
  ABZM97_RS09250 (ABZM97_09250) pgsA 1869431..1870012 (+) 582 WP_087991656.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABZM97_RS09255 (ABZM97_09255) cinA 1870031..1871281 (+) 1251 WP_087991657.1 competence/damage-inducible protein A Machinery gene
  ABZM97_RS09260 (ABZM97_09260) recA 1871454..1872497 (+) 1044 WP_087991658.1 recombinase RecA Machinery gene
  ABZM97_RS09265 (ABZM97_09265) - 1872666..1873841 (+) 1176 WP_253269101.1 serine hydrolase -
  ABZM97_RS09270 (ABZM97_09270) rny 1874118..1875680 (+) 1563 WP_003221010.1 ribonuclease Y -
  ABZM97_RS09275 (ABZM97_09275) ymdB 1875753..1876547 (+) 795 WP_148961786.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase -
  ABZM97_RS09280 (ABZM97_09280) spoVS 1876747..1877007 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37925.12 Da        Isoelectric Point: 4.9198

>NTDB_id=1022027 ABZM97_RS09260 WP_087991658.1 1871454..1872497(+) (recA) [Bacillus vallismortis strain BL-01]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLTLDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNHGAVQQAEEAQEELEFKE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1022027 ABZM97_RS09260 WP_087991658.1 1871454..1872497(+) (recA) [Bacillus vallismortis strain BL-01]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGCAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTCCCAAGCGGCTCCCTCACTCTTGATACGGCACTAGGAATTGGCGGAT
ATCCGCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGCTCGGGTAAAACAACTGTGGCGCTTCATGCGATTGCTGAG
GTTCAGCAGCAGGGCGGACAAGCCGCGTTTATCGATGCAGAGCATGCGTTAGACCCGGTATACGCGCAAAAGCTCGGTGT
CAACATCGAAGAGCTTTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCGTTGGTTCGAAGCG
GTGCAGTTGACATTGTTGTTGTCGACTCTGTGGCGGCTCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCG
CATGTTGGTTTACAAGCACGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGAGCCATTAACAAATCGAAGACAATCGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGTGTTATGTTCGGGAACCCGGAAACAACTCCTGGCGGCCGTGCGCTGA
AATTCTACTCTTCCGTACGTCTAGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTGAAAAACAAGGTGGCACCGCCGTTCCGTACAGCCGAAGTTGATATTATGTACGGAGAAGGCATTTC
AAAAGAAGGCGAAATCATTGATCTTGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGACAAGGCCGTGAAAATGCAAAACAATTCTTGAAAGAAAATAAAGATATCATGCTAATGATTCAGGAGCAA
ATTCGCGAACATTACGGCTTGGATAATCACGGAGCAGTGCAGCAAGCTGAAGAGGCACAAGAAGAATTAGAATTTAAAGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

98.276

100

0.986
  recA Latilactobacillus sakei subsp. sakei 23K

74.618

94.236

0.703
  recA Streptococcus mutans UA159

65.706

100

0.657
  recA Streptococcus pneumoniae D39

68.485

95.101

0.651
  recA Streptococcus mitis NCTC 12261

68.485

95.101

0.651
  recA Streptococcus pneumoniae Rx1

68.485

95.101

0.651
  recA Streptococcus pneumoniae R6

68.485

95.101

0.651
  recA Streptococcus pneumoniae TIGR4

68.485

95.101

0.651
  recA Streptococcus mitis SK321

68.182

95.101

0.648
  recA Streptococcus pyogenes NZ131

67.378

94.524

0.637
  recA Helicobacter pylori 26695

63.265

98.847

0.625
  recA Helicobacter pylori strain NCTC11637

63.265

98.847

0.625
  recA Lactococcus lactis subsp. cremoris KW2

65.455

95.101

0.622
  recA Neisseria gonorrhoeae strain FA1090

65.046

94.813

0.617
  recA Neisseria gonorrhoeae MS11

65.046

94.813

0.617
  recA Neisseria gonorrhoeae MS11

65.046

94.813

0.617
  recA Ralstonia pseudosolanacearum GMI1000

65.244

94.524

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.059

97.983

0.608
  recA Vibrio cholerae strain A1552

60.756

99.135

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.756

99.135

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

94.236

0.602
  recA Acinetobacter baumannii D1279779

60.819

98.559

0.599
  recA Acinetobacter baylyi ADP1

60.29

99.424

0.599
  recA Glaesserella parasuis strain SC1401

59.71

99.424

0.594
  recA Pseudomonas stutzeri DSM 10701

62.813

92.219

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.938

92.219

0.562

Multiple sequence alignment