Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ABZM97_RS09255 Genome accession   NZ_CP160797
Coordinates   1870031..1871281 (+) Length   416 a.a.
NCBI ID   WP_087991657.1    Uniprot ID   -
Organism   Bacillus vallismortis strain BL-01     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1865031..1876281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS09225 (ABZM97_09225) - 1865123..1866409 (+) 1287 WP_202327669.1 pitrilysin family protein -
  ABZM97_RS09230 (ABZM97_09230) - 1866461..1867189 (+) 729 WP_087991652.1 SDR family oxidoreductase -
  ABZM97_RS09235 (ABZM97_09235) - 1867270..1867527 (+) 258 WP_087991653.1 DUF3243 domain-containing protein -
  ABZM97_RS09240 (ABZM97_09240) - 1867657..1868448 (+) 792 WP_087991654.1 YmfK family protein -
  ABZM97_RS09245 (ABZM97_09245) rodZ 1868515..1869381 (+) 867 WP_207194100.1 cell shape determination protein RodZ -
  ABZM97_RS09250 (ABZM97_09250) pgsA 1869431..1870012 (+) 582 WP_087991656.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABZM97_RS09255 (ABZM97_09255) cinA 1870031..1871281 (+) 1251 WP_087991657.1 competence/damage-inducible protein A Machinery gene
  ABZM97_RS09260 (ABZM97_09260) recA 1871454..1872497 (+) 1044 WP_087991658.1 recombinase RecA Machinery gene
  ABZM97_RS09265 (ABZM97_09265) - 1872666..1873841 (+) 1176 WP_253269101.1 serine hydrolase -
  ABZM97_RS09270 (ABZM97_09270) rny 1874118..1875680 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45352.67 Da        Isoelectric Point: 5.6734

>NTDB_id=1022026 ABZM97_RS09255 WP_087991657.1 1870031..1871281(+) (cinA) [Bacillus vallismortis strain BL-01]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRTAEERSDFIVFSGGLGPTKDDL
TKETIANVLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHDSRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETGRLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGITIAAAESFTGGLFSEWLTDLSGASTLFTGGVVCYSNDVKQHVLG
VKKDTLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDTQAGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1022026 ABZM97_RS09255 WP_087991657.1 1870031..1871281(+) (cinA) [Bacillus vallismortis strain BL-01]
ATGGAATTTCCAAAAAAAGCAGAAATTATTGCAGTCGGTTCTGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGAGTGAACGTATTTTATCATACAGCAGTCGGAGATAATCCGGAGCGGCTGA
AGCAGGTCATCCGTACTGCTGAAGAACGATCTGACTTCATTGTTTTTTCAGGAGGTCTCGGACCGACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATGTGCTGGGCCGTCCGCTCGTATTAAATGATGAAGCGTTCCAATCCATTGAGGATTATTT
CAAACGGACAAAACGAACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGATCTGACGTACTGGCGAATC
ACTTCGGAATGGCGCCGGGAATGCTCACAGAGCACGATTCGCGCTTTTATATGCTTCTTCCTGGGCCGCCAAGCGAATTG
CGTCCCATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGCTCAAATGAAAAAATTGTGTCAACCGTTCT
TCGCTTTTTCGGTATCGGCGAATCTCAGCTTGAAGCCGACTTGGAAGATATTATTGATGCGCAAACGAACCCGACAATCG
CTCCTTTGGCGGCTGACGGAGAGGTAACGCTGCGTCTGACAGCCAAACATGCTGACGAAAAGGAAACGGGGCGTCTGTTA
AAAGAAACAGAGGCTGTTATCTTAGAACGTGTCGGGGAATTTTTCTATGGCTACGATGATACTTCCCTTGTAAAAGAGCT
TTCTAAAGCATGTAAGGAAAAAGGCATTACGATTGCCGCCGCAGAAAGCTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CGGATCTTAGCGGTGCTTCAACACTATTTACCGGCGGCGTTGTTTGCTATTCAAACGACGTGAAGCAGCATGTGCTTGGC
GTCAAGAAGGATACTTTAGACCGTTTTGGGGCGGTCAGCAAGGAGTGCGCATCAGAGCTGGCAAAGGGTGTTCAAAAGCT
CACTGGCAGCGATATCGGCATCAGCTTTACCGGTGTAGCAGGTCCTGATACGCAAGCAGGGCATGAGCCTGGACATGTGT
TTATCGGCATTTCAGCAAATGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGTTCCAGAACGGGAATCAGAAAACGC
GGCGCCAAATACGGCTGCCATTTAATCTTGAAGCTTTTAGAACAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

96.154

100

0.962
  cinA Streptococcus mitis SK321

45.455

100

0.457
  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457
  cinA Streptococcus mitis NCTC 12261

45.455

100

0.457
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454
  cinA Streptococcus pneumoniae R6

45.215

100

0.454
  cinA Streptococcus pneumoniae D39

44.976

100

0.452
  cinA Streptococcus suis isolate S10

42.44

90.625

0.385

Multiple sequence alignment