Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB1H92_RS09530 Genome accession   NZ_CP160452
Coordinates   2024467..2025534 (-) Length   355 a.a.
NCBI ID   WP_115360520.1    Uniprot ID   A0A380BHG0
Organism   Sporosarcina pasteurii strain DSM 33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2019467..2030534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1H92_RS09510 (AB1H92_09520) miaB 2019555..2021096 (-) 1542 WP_115360524.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AB1H92_RS09515 (AB1H92_09525) - 2021335..2021604 (-) 270 WP_134268500.1 stage V sporulation protein S -
  AB1H92_RS09520 (AB1H92_09530) - 2021690..2022487 (-) 798 WP_115360522.1 TIGR00282 family metallophosphoesterase -
  AB1H92_RS09525 (AB1H92_09535) rny 2022606..2024162 (-) 1557 WP_115360521.1 ribonuclease Y -
  AB1H92_RS09530 (AB1H92_09540) recA 2024467..2025534 (-) 1068 WP_115360520.1 recombinase RecA Machinery gene
  AB1H92_RS09535 (AB1H92_09545) cinA 2025721..2026959 (-) 1239 WP_115360519.1 competence/damage-inducible protein A Machinery gene
  AB1H92_RS09540 (AB1H92_09550) pgsA 2026973..2027551 (-) 579 WP_115360518.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB1H92_RS09545 (AB1H92_09555) - 2027783..2028670 (-) 888 WP_166739524.1 helix-turn-helix domain-containing protein -
  AB1H92_RS09550 (AB1H92_09560) - 2028687..2029523 (-) 837 WP_115360516.1 DUF3388 domain-containing protein -
  AB1H92_RS09555 (AB1H92_09565) ymfI 2029630..2030364 (-) 735 WP_115360515.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38235.38 Da        Isoelectric Point: 4.8093

>NTDB_id=1021264 AB1H92_RS09530 WP_115360520.1 2024467..2025534(-) (recA) [Sporosarcina pasteurii strain DSM 33]
MSDRKAALDKALKDIEKQFGKGSVMKLGEQTDRKISTVSSGSLALDLALGVGGYPRGRVVEIYGPESSGKTTVALHAIAA
AQAEGGSAAFIDAEHALDPEYAKKLGVNIDELLLSQPDTGEQALEICEALVRSGAIDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSRTNAIFINQIREKVGVMFGSPEVTPGGRALKFYSSVRIDVRRGEAIKQGTDIVGNKT
RIRVVKNKVAPPFRTAEVDIMYGQGISQEGEIIDLGAETEVVQKSGAWYSYEGERLGQGRENAKQFLIENPDIKAEIDQK
IRAFYGLDGAAEIIDGHDVDEADEELELLLEDKKK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1021264 AB1H92_RS09530 WP_115360520.1 2024467..2025534(-) (recA) [Sporosarcina pasteurii strain DSM 33]
TTGAGCGATCGCAAAGCCGCTTTAGATAAAGCGTTAAAAGATATTGAAAAACAGTTTGGAAAAGGTTCCGTCATGAAACT
TGGCGAACAAACAGATCGTAAAATTTCAACTGTTTCAAGTGGTTCACTTGCATTAGACCTTGCACTAGGGGTGGGCGGAT
ACCCACGTGGACGTGTTGTTGAAATATATGGTCCTGAGAGTTCAGGTAAAACGACAGTTGCACTTCATGCGATTGCCGCT
GCACAGGCAGAAGGTGGGTCAGCCGCATTCATCGATGCAGAGCATGCGCTAGATCCGGAGTATGCTAAGAAACTTGGCGT
TAATATTGACGAGTTGTTACTTTCGCAGCCGGATACGGGGGAGCAGGCCCTTGAAATTTGTGAGGCATTAGTACGTAGTG
GTGCAATTGATATTATTGTTGTTGACTCAGTTGCTGCACTTGTACCAAAAGCTGAGATAGAAGGCGAGATGGGGGATTCC
CATGTTGGTCTACAGGCTCGTCTCATGTCACAGGCACTTCGTAAGTTATCTGGTGCAATTAACAAGTCAAGAACAAACGC
TATTTTTATTAACCAGATTCGTGAAAAAGTCGGCGTTATGTTTGGGAGTCCGGAAGTTACACCGGGTGGCCGTGCGTTAA
AGTTTTACTCTTCTGTTCGTATCGACGTTCGTCGAGGAGAAGCGATTAAACAAGGTACAGATATTGTCGGGAACAAAACG
CGTATTCGAGTTGTGAAAAATAAAGTTGCGCCTCCGTTCCGCACGGCAGAAGTCGATATTATGTATGGACAGGGTATTTC
GCAAGAAGGCGAAATTATCGACCTTGGTGCAGAAACAGAAGTCGTTCAAAAGAGCGGTGCGTGGTATTCGTATGAAGGTG
AAAGACTTGGACAAGGAAGAGAAAATGCGAAGCAGTTTTTAATTGAAAACCCTGATATTAAGGCAGAAATTGATCAGAAA
ATCAGAGCATTCTATGGTCTTGATGGCGCGGCTGAAATTATTGATGGTCATGATGTTGATGAAGCAGATGAAGAACTTGA
ACTATTATTAGAAGATAAAAAGAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380BHG0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.622

92.394

0.763
  recA Latilactobacillus sakei subsp. sakei 23K

69.801

98.873

0.69
  recA Streptococcus mitis SK321

62.398

100

0.645
  recA Streptococcus mitis NCTC 12261

63.158

100

0.642
  recA Streptococcus pneumoniae TIGR4

64.943

98.028

0.637
  recA Streptococcus pneumoniae Rx1

64.943

98.028

0.637
  recA Streptococcus pneumoniae D39

64.943

98.028

0.637
  recA Streptococcus pneumoniae R6

64.943

98.028

0.637
  recA Neisseria gonorrhoeae MS11

65.13

97.746

0.637
  recA Neisseria gonorrhoeae MS11

65.13

97.746

0.637
  recA Neisseria gonorrhoeae strain FA1090

65.13

97.746

0.637
  recA Streptococcus mutans UA159

68.085

92.676

0.631
  recA Lactococcus lactis subsp. cremoris KW2

67.273

92.958

0.625
  recA Streptococcus pyogenes NZ131

66.768

92.394

0.617
  recA Acinetobacter baylyi ADP1

62.286

98.592

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.875

90.141

0.603
  recA Vibrio cholerae strain A1552

66.875

90.141

0.603
  recA Ralstonia pseudosolanacearum GMI1000

65.443

92.113

0.603
  recA Acinetobacter baumannii D1279779

60.795

99.155

0.603
  recA Pseudomonas stutzeri DSM 10701

66.355

90.423

0.6
  recA Glaesserella parasuis strain SC1401

60.458

98.31

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.058

96.62

0.58
  recA Helicobacter pylori strain NCTC11637

62.462

91.549

0.572
  recA Helicobacter pylori 26695

62.154

91.549

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.35

91.831

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.248

90.704

0.546

Multiple sequence alignment