Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB1H92_RS09535 Genome accession   NZ_CP160452
Coordinates   2025721..2026959 (-) Length   412 a.a.
NCBI ID   WP_115360519.1    Uniprot ID   A0A380BJG9
Organism   Sporosarcina pasteurii strain DSM 33     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2020721..2031959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1H92_RS09515 (AB1H92_09525) - 2021335..2021604 (-) 270 WP_134268500.1 stage V sporulation protein S -
  AB1H92_RS09520 (AB1H92_09530) - 2021690..2022487 (-) 798 WP_115360522.1 TIGR00282 family metallophosphoesterase -
  AB1H92_RS09525 (AB1H92_09535) rny 2022606..2024162 (-) 1557 WP_115360521.1 ribonuclease Y -
  AB1H92_RS09530 (AB1H92_09540) recA 2024467..2025534 (-) 1068 WP_115360520.1 recombinase RecA Machinery gene
  AB1H92_RS09535 (AB1H92_09545) cinA 2025721..2026959 (-) 1239 WP_115360519.1 competence/damage-inducible protein A Machinery gene
  AB1H92_RS09540 (AB1H92_09550) pgsA 2026973..2027551 (-) 579 WP_115360518.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB1H92_RS09545 (AB1H92_09555) - 2027783..2028670 (-) 888 WP_166739524.1 helix-turn-helix domain-containing protein -
  AB1H92_RS09550 (AB1H92_09560) - 2028687..2029523 (-) 837 WP_115360516.1 DUF3388 domain-containing protein -
  AB1H92_RS09555 (AB1H92_09565) ymfI 2029630..2030364 (-) 735 WP_115360515.1 elongation factor P 5-aminopentanone reductase -
  AB1H92_RS09560 (AB1H92_09570) yfmH 2030351..2031658 (-) 1308 WP_115360514.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44546.15 Da        Isoelectric Point: 5.3202

>NTDB_id=1021265 AB1H92_RS09535 WP_115360519.1 2025721..2026959(-) (cinA) [Sporosarcina pasteurii strain DSM 33]
MKVEVIAVGSELLLGQITNTNAAFISARLAEIGADVYYHTVVGDNPIRLKEAIEIAEKRADVLIFSGGLGPTKDDMTKET
IAAHIGLELVSDKEALTYIEQYFIRSKRTMTENNKKQALVFNGSTVLNNRTGMAPGMAVENNGKHYILVPGPPHEMEPMI
VDEAIPYLLEQSGEREIITSHVLKFYGIGEAELEHRIQPLLDKQSNPTIAPLATADAVTLRITAKAATIEDAHKMIAPIE
QEIRAIVGEFIFGTDEDTLSSKALELLQSHGYTLAAAESLTAGLFLAELAKEPGVSSALAGGLVVYNEEAKVEQLGVDKK
LLEEHGIVSSECAASLALKVQEKFNTNIGIGITGAAGPTPHDGEPAGTVWIGIALPNRVPMTYKLLLSGSRNANRHRTAR
FALYYLIKLLTK

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=1021265 AB1H92_RS09535 WP_115360519.1 2025721..2026959(-) (cinA) [Sporosarcina pasteurii strain DSM 33]
ATGAAAGTTGAAGTTATAGCAGTTGGTTCTGAATTATTGCTCGGTCAAATTACGAATACAAATGCTGCTTTTATTTCAGC
ACGTCTAGCTGAGATTGGCGCAGATGTTTATTATCATACAGTTGTTGGGGATAATCCTATCCGGTTAAAAGAAGCAATAG
AAATTGCTGAAAAACGTGCGGATGTCTTAATCTTTTCAGGCGGACTTGGACCGACAAAAGATGATATGACAAAAGAGACC
ATTGCTGCTCATATTGGCTTGGAGCTTGTAAGCGATAAAGAGGCGCTTACTTATATTGAACAGTATTTTATACGAAGTAA
ACGAACTATGACAGAGAATAATAAAAAACAGGCACTTGTTTTTAATGGGAGCACAGTACTAAATAATCGCACTGGCATGG
CGCCTGGCATGGCTGTTGAAAATAATGGGAAACATTACATACTCGTACCTGGGCCACCCCATGAAATGGAGCCAATGATT
GTCGATGAAGCGATTCCTTACTTACTAGAACAAAGTGGAGAAAGAGAAATTATTACTTCTCATGTTTTGAAGTTTTATGG
AATTGGTGAAGCAGAATTGGAACATCGTATCCAACCACTGTTAGATAAACAATCAAATCCAACCATTGCTCCGCTAGCAA
CGGCAGATGCCGTCACGCTTAGGATTACTGCGAAAGCGGCGACAATTGAAGATGCGCATAAAATGATTGCGCCAATTGAA
CAAGAAATACGCGCCATTGTCGGCGAATTTATTTTTGGAACGGATGAGGATACATTATCCTCAAAAGCATTAGAATTGCT
TCAATCACATGGTTATACATTAGCAGCTGCTGAAAGCTTAACAGCGGGTCTCTTTCTAGCAGAGTTAGCGAAAGAGCCAG
GGGTCAGTTCAGCATTGGCAGGCGGTCTCGTCGTTTATAATGAAGAAGCAAAAGTTGAACAACTTGGTGTGGACAAAAAA
CTATTGGAAGAACATGGAATTGTCAGTAGTGAATGTGCTGCTTCATTGGCATTAAAAGTTCAAGAGAAGTTTAATACGAA
TATTGGTATCGGAATAACAGGTGCAGCTGGTCCAACACCACATGATGGTGAACCGGCAGGAACAGTCTGGATCGGGATAG
CGTTACCTAATCGGGTTCCAATGACGTATAAGCTATTACTTTCAGGTTCAAGAAATGCCAATCGTCACCGAACGGCAAGA
TTTGCTTTGTATTATCTAATCAAGCTGTTAACTAAGTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380BJG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.365

99.757

0.502
  cinA Streptococcus pneumoniae TIGR4

44.125

92.961

0.41
  cinA Streptococcus pneumoniae Rx1

43.864

92.961

0.408
  cinA Streptococcus pneumoniae R6

43.864

92.961

0.408
  cinA Streptococcus mitis SK321

43.603

92.961

0.405
  cinA Streptococcus pneumoniae D39

43.603

92.961

0.405
  cinA Streptococcus mutans UA159

40.291

100

0.403
  cinA Streptococcus mitis NCTC 12261

43.081

92.961

0.4

Multiple sequence alignment