Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB0R87_RS08385 Genome accession   NZ_CP160224
Coordinates   1680368..1681405 (+) Length   345 a.a.
NCBI ID   WP_050944976.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ950     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1675368..1686405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R87_RS08360 (AB0R87_08360) - 1676152..1676409 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  AB0R87_RS08365 (AB0R87_08365) - 1676541..1677332 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  AB0R87_RS08370 (AB0R87_08370) - 1677356..1678267 (+) 912 WP_003212257.1 helix-turn-helix domain-containing protein -
  AB0R87_RS08375 (AB0R87_08375) pgsA 1678343..1678924 (+) 582 WP_310426755.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB0R87_RS08380 (AB0R87_08380) cinA 1678941..1680191 (+) 1251 WP_366597544.1 competence/damage-inducible protein A Machinery gene
  AB0R87_RS08385 (AB0R87_08385) recA 1680368..1681405 (+) 1038 WP_050944976.1 recombinase RecA Machinery gene
  AB0R87_RS08390 (AB0R87_08390) - 1681547..1682722 (+) 1176 WP_366597496.1 serine hydrolase domain-containing protein -
  AB0R87_RS08395 (AB0R87_08395) rny 1682956..1684518 (+) 1563 WP_003211958.1 ribonuclease Y -
  AB0R87_RS08400 (AB0R87_08400) - 1684607..1685401 (+) 795 WP_003212177.1 TIGR00282 family metallophosphoesterase -
  AB0R87_RS08405 (AB0R87_08405) spoVS 1685603..1685863 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37632.83 Da        Isoelectric Point: 4.8329

>NTDB_id=1019914 AB0R87_RS08385 WP_050944976.1 1680368..1681405(+) (recA) [Bacillus pumilus strain JJ950]
MSDRQAALDMALKQIEKQFGKGSIMKLGERTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVAQQEAEEALEELE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1019914 AB0R87_RS08385 WP_050944976.1 1680368..1681405(+) (recA) [Bacillus pumilus strain JJ950]
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGTAAAGGCTCTATTATGAAACT
AGGAGAGCGAACAGATACACGTATTTCAACAGTACCGAGTGGTTCGTTAGCACTTGATACTGCACTAGGAATAGGTGGAT
ATCCTCGTGGCCGTATTATTGAAGTATATGGTCCAGAGAGTTCTGGTAAAACGACAGTAGCACTTCATGCCATTGCCGAG
GTTCAGCAGCAGGGAGGACAAGCTGCATTTATTGATGCAGAGCATGCGCTCGATCCAGTTTACGCTCAAAAACTAGGTGT
CAATATTGATGAGTTGTTACTTTCTCAGCCTGATACAGGAGAACAAGCACTTGAAATTGCAGAAGCTCTTGTCCGCAGTG
GTGCAGTTGACATTGTTGTTATTGACTCAGTAGCTGCTCTTGTACCAAAAGCAGAGATTGAAGGAGACATGGGTGATTCA
CACGTTGGTCTACAAGCACGTTTGATGTCCCAAGCACTTCGTAAACTATCTGGTGCCATTAATAAATCAAAAACCATTGC
CATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTCATGTTCGGTAACCCTGAAACAACGCCAGGTGGACGTGCGCTGA
AGTTCTATTCATCTGTTCGTTTAGAAGTGCGCCGTGCTGAACAGCTGAAGCAGGGCAATGACATTATGGGGAATAAAACG
AGAATTAAAGTAGTGAAAAACAAAGTAGCACCGCCATTCCGTATTGCAGAAGTAGACATTATGTACGGTGAAGGAATTTC
AAAAGAGGGCGAAATCATCGACCTTGGAAGCGAACTAGATATCGTACAAAAGAGCGGTGCTTGGTATTCTTACCAAGAGG
AACGTCTTGGACAAGGCCGCGAAAATGCGAAACAGTTCCTGAAAGAAAACAAAGATATCATGCTAATGATTCAGGAGCAA
ATTCGCGAACATTACGGCTTGGATAATAACGGAGTAGCGCAGCAGGAAGCTGAAGAGGCGCTAGAAGAATTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.232

100

0.962
  recA Latilactobacillus sakei subsp. sakei 23K

74.618

94.783

0.707
  recA Streptococcus pneumoniae Rx1

67.435

100

0.678
  recA Streptococcus pneumoniae D39

67.435

100

0.678
  recA Streptococcus pneumoniae R6

67.435

100

0.678
  recA Streptococcus pneumoniae TIGR4

67.435

100

0.678
  recA Streptococcus mitis NCTC 12261

67.733

99.71

0.675
  recA Streptococcus mutans UA159

66.667

100

0.672
  recA Streptococcus mitis SK321

69.091

95.652

0.661
  recA Streptococcus pyogenes NZ131

68.293

95.072

0.649
  recA Lactococcus lactis subsp. cremoris KW2

65.875

97.681

0.643
  recA Helicobacter pylori 26695

62.791

99.71

0.626
  recA Helicobacter pylori strain NCTC11637

62.791

99.71

0.626
  recA Ralstonia pseudosolanacearum GMI1000

64.742

95.362

0.617
  recA Neisseria gonorrhoeae MS11

64.832

94.783

0.614
  recA Neisseria gonorrhoeae MS11

64.832

94.783

0.614
  recA Neisseria gonorrhoeae strain FA1090

64.832

94.783

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.353

98.551

0.614
  recA Acinetobacter baylyi ADP1

60.58

100

0.606
  recA Acinetobacter baumannii D1279779

61.834

97.971

0.606
  recA Glaesserella parasuis strain SC1401

61.176

98.551

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

93.043

0.597
  recA Vibrio cholerae strain A1552

64.174

93.043

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.783

0.591
  recA Pseudomonas stutzeri DSM 10701

63.125

92.754

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

92.754

0.559

Multiple sequence alignment