Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB0R87_RS08380 Genome accession   NZ_CP160224
Coordinates   1678941..1680191 (+) Length   416 a.a.
NCBI ID   WP_366597544.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ950     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1673941..1685191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R87_RS08355 (AB0R87_08355) - 1675350..1676078 (+) 729 WP_106028933.1 SDR family oxidoreductase -
  AB0R87_RS08360 (AB0R87_08360) - 1676152..1676409 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  AB0R87_RS08365 (AB0R87_08365) - 1676541..1677332 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  AB0R87_RS08370 (AB0R87_08370) - 1677356..1678267 (+) 912 WP_003212257.1 helix-turn-helix domain-containing protein -
  AB0R87_RS08375 (AB0R87_08375) pgsA 1678343..1678924 (+) 582 WP_310426755.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB0R87_RS08380 (AB0R87_08380) cinA 1678941..1680191 (+) 1251 WP_366597544.1 competence/damage-inducible protein A Machinery gene
  AB0R87_RS08385 (AB0R87_08385) recA 1680368..1681405 (+) 1038 WP_050944976.1 recombinase RecA Machinery gene
  AB0R87_RS08390 (AB0R87_08390) - 1681547..1682722 (+) 1176 WP_366597496.1 serine hydrolase domain-containing protein -
  AB0R87_RS08395 (AB0R87_08395) rny 1682956..1684518 (+) 1563 WP_003211958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45729.88 Da        Isoelectric Point: 5.1489

>NTDB_id=1019913 AB0R87_RS08380 WP_366597544.1 1678941..1680191(+) (cinA) [Bacillus pumilus strain JJ950]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQENDTFYMLLPGPPSEL
HPMFENEAKPLISEKLDLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHKDEKETERLL
KETEAKILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILSGSIVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGTRKLTGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDHTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1019913 AB0R87_RS08380 WP_366597544.1 1678941..1680191(+) (cinA) [Bacillus pumilus strain JJ950]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTATTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAGCTGGCTGAAATTGGTGTGAATGTTTATTACCATACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCGCAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACGAAAGATGATTTA
ACAAAAGAAACCATCGCAAGTACGCTTGGAAAAGAGCTCGTGCTAAATGAAGAAGCATTTGAATCCATTCAAGAATACTT
TCGAAAGACTGGACGAGACATGTCACCGAATAACCGGAAGCAGGCACTCGTCCTAGAAGGATCTGATGTGCTCGTGAACC
GGTTTGGAATGGCTCCAGGTATGTTTATTCAAGAAAACGATACGTTTTATATGCTTCTTCCTGGTCCGCCAAGTGAACTG
CATCCAATGTTTGAGAACGAGGCGAAGCCGCTGATATCTGAGAAACTGGATTTGAAGGAAAAAATCGTGTCTGTTGTTCT
TCGCTTTTTCGGAATCGGTGAATCACAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCAACGATTG
CACCTCTCGCATCTGACGGTGAAGTGACACTTAGGCTCACGGCTAAGCATAAGGATGAAAAAGAAACGGAGCGTCTGTTA
AAAGAGACGGAAGCGAAAATTTTAGCGCGTGTAGGAGAGTACTTCTACGGGTATGGTGATACATCACTTGTCCGTGAAGC
CTCCAAGGCTCTGCACGAACACGGGAAAACAGTGGCAGCGGCTGAGAGCCTGACAGGCGGAATGTTTTCTGAATGGCTGA
CAGATCTTGAAGGTGCATCGTCGATTTTAAGCGGCAGTATCGTTTGTTATACAAACCAAGTCAAACAGCAGGTGCTTGGC
TGCCGTGAGGAAACATTGTCTTCTCATGGTGCTGTTAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGTACTAGAAAGCT
TACGGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGCCCTGATACCCACGAGGGACAGCCTGTCGGAAAAGTGT
TCATCGGGCTATCTACGAAAGACCATACAGACGTGTTTGAATGGATGTTTACAGGAAGCCGGTCGGGCATTCGAAAGCGC
GCTGTGAAATACGGACTGCATCACTTGCTCAATTTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

73.976

99.76

0.738
  cinA Streptococcus mutans UA159

48.317

100

0.483
  cinA Streptococcus mitis SK321

47.506

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.268

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.268

100

0.478
  cinA Streptococcus pneumoniae Rx1

47.031

100

0.476
  cinA Streptococcus pneumoniae R6

47.031

100

0.476
  cinA Streptococcus pneumoniae D39

46.793

100

0.474
  cinA Streptococcus suis isolate S10

43.386

90.865

0.394

Multiple sequence alignment