Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABVJ71_RS03865 Genome accession   NZ_CP159358
Coordinates   727858..728898 (-) Length   346 a.a.
NCBI ID   WP_353855687.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 722858..733898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS03850 spoVS 724639..724899 (-) 261 WP_003211281.1 stage V sporulation protein SpoVS -
  ABVJ71_RS03855 - 725102..725896 (-) 795 WP_353855685.1 TIGR00282 family metallophosphoesterase -
  ABVJ71_RS03860 rny 725985..727550 (-) 1566 WP_353855686.1 ribonuclease Y -
  ABVJ71_RS03865 recA 727858..728898 (-) 1041 WP_353855687.1 recombinase RecA Machinery gene
  ABVJ71_RS03870 cinA 729077..730327 (-) 1251 WP_353855688.1 competence/damage-inducible protein A Machinery gene
  ABVJ71_RS03875 pgsA 730344..730925 (-) 582 WP_353855689.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABVJ71_RS03880 - 730996..731895 (-) 900 WP_353855690.1 RodZ family helix-turn-helix domain-containing protein -
  ABVJ71_RS03885 - 731919..732710 (-) 792 WP_353855691.1 DUF3388 domain-containing protein -
  ABVJ71_RS03890 - 732842..733099 (-) 258 WP_353855692.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37791.01 Da        Isoelectric Point: 4.8366

>NTDB_id=1013360 ABVJ71_RS03865 WP_353855687.1 727858..728898(-) (recA) [Bacillus sp. Bos-x628]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTQISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKVGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDILLMIQEQ
IREHYGLNTNGVKPIEEEQEELEFNE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1013360 ABVJ71_RS03865 WP_353855687.1 727858..728898(-) (recA) [Bacillus sp. Bos-x628]
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGTAAAGGCTCTATTATGAAACT
AGGAGAGAAAACAGATACACAAATTTCAACAGTGCCTAGTGGTTCATTAGCACTTGATACTGCGCTGGGGATAGGTGGAT
ATCCTCGCGGTCGTATTATTGAAGTTTACGGTCCAGAGAGTTCTGGTAAAACAACAGTGGCTCTTCATGCGATTGCAGAG
GTTCAGCAACAGGGAGGACAAGCCGCATTTATTGATGCAGAGCATGCACTTGATCCTGTTTATGCTCAAAAGGTAGGTGT
CAATATCGATGAGCTTTTACTGTCTCAGCCGGATACAGGAGAACAAGCACTTGAAATTGCAGAGGCACTTGTCCGCAGTG
GTGCAGTTGATATTGTTGTCATTGACTCAGTTGCTGCTCTTGTACCAAAAGCAGAGATTGAAGGAGACATGGGTGATTCA
CACGTTGGTCTTCAAGCACGTTTGATGTCTCAAGCACTTCGTAAACTATCAGGTGCAATCAACAAATCGAAAACAATTGC
GATCTTTATCAACCAAATTCGTGAAAAAGTAGGCGTCATGTTTGGGAACCCTGAAACAACTCCTGGCGGACGAGCATTAA
AGTTTTATTCTTCTGTTCGTTTAGAAGTGCGTCGTGCTGAACAGCTGAAACAAGGCAATGACATTATGGGGAATAAAACA
AGAATTAAAGTAGTGAAAAACAAAGTTGCACCACCATTTCGTGTTGCTGAAGTAGATATCATGTACGGTGAAGGGATCTC
CAAAGAGGGAGAAATCATCGATCTTGGAAGCGAACTAGATATTGTACAAAAGAGCGGTGCTTGGTATTCTTACCAAGAGG
AACGCCTTGGACAAGGCCGCGAAAATGCGAAACAGTTCCTGAAAGAAAACAAAGATATCCTTCTAATGATTCAAGAACAA
ATCAGGGAACACTACGGTTTAAATACAAACGGAGTGAAACCAATTGAAGAAGAACAAGAAGAATTGGAATTTAATGAGTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.084

95.954

0.922
  recA Latilactobacillus sakei subsp. sakei 23K

75.46

94.22

0.711
  recA Streptococcus mitis SK321

66.377

99.711

0.662
  recA Streptococcus mutans UA159

66.764

99.133

0.662
  recA Streptococcus pneumoniae TIGR4

68.788

95.376

0.656
  recA Streptococcus pneumoniae R6

68.788

95.376

0.656
  recA Streptococcus mitis NCTC 12261

68.788

95.376

0.656
  recA Streptococcus pneumoniae Rx1

68.788

95.376

0.656
  recA Streptococcus pneumoniae D39

68.788

95.376

0.656
  recA Streptococcus pyogenes NZ131

67.988

94.798

0.645
  recA Lactococcus lactis subsp. cremoris KW2

66.364

95.376

0.633
  recA Helicobacter pylori strain NCTC11637

62.865

98.844

0.621
  recA Helicobacter pylori 26695

62.865

98.844

0.621
  recA Neisseria gonorrhoeae MS11

64.724

94.22

0.61
  recA Neisseria gonorrhoeae MS11

64.724

94.22

0.61
  recA Neisseria gonorrhoeae strain FA1090

64.724

94.22

0.61
  recA Ralstonia pseudosolanacearum GMI1000

64.526

94.509

0.61
  recA Vibrio cholerae strain A1552

61.159

99.711

0.61
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.159

99.711

0.61
  recA Acinetobacter baumannii D1279779

61.652

97.977

0.604
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.11

94.22

0.604
  recA Glaesserella parasuis strain SC1401

62.614

95.087

0.595
  recA Acinetobacter baylyi ADP1

60.472

97.977

0.592
  recA Pseudomonas stutzeri DSM 10701

60.355

97.688

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

94.509

0.587
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.752

93.353

0.558

Multiple sequence alignment